Makefile

   1 # Copyright (C) 2006-2009  Joris Mooij  [joris dot mooij at tuebingen dot mpg dot de]
   2 # Radboud University Nijmegen, The Netherlands /
   3 # Max Planck Institute for Biological Cybernetics, Germany
   4 #
   5 # This file is part of libDAI.
   6 #
   7 # libDAI is free software; you can redistribute it and/or modify
   8 # it under the terms of the GNU General Public License as published by
   9 # the Free Software Foundation; either version 2 of the License, or
  10 # (at your option) any later version.
  11 #
  12 # libDAI is distributed in the hope that it will be useful,
  13 # but WITHOUT ANY WARRANTY; without even the implied warranty of
  14 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  15 # GNU General Public License for more details.
  16 #
  17 # You should have received a copy of the GNU General Public License
  18 # along with libDAI; if not, write to the Free Software
  19 # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
  20
  21
  22 # Choose OS from {LINUX, WINDOWS, CYGWIN, MACOSX}
  23 # LINUX:   GNU/Linux and other UNIX variants
  24 # WINDOWS: Visual C++ with GNU Make
  25 # CYGWIN:  CygWin
  26 # MACOSX:  MacOSX
  27 OS=LINUX
  28
  29 # Enable/disable various approximate inference methods
  30 WITH_BP=true
  31 WITH_MF=true
  32 WITH_HAK=true
  33 WITH_LC=true
  34 WITH_TREEEP=true
  35 WITH_JTREE=true
  36 WITH_MR=true
  37 WITH_GIBBS=true
  38
  39 # Build with debug info?
  40 DEBUG=true
  41
  42 # Build matlab interface?
  43 WITH_MATLAB=
  44 # New/old matlab version?
  45 NEW_MATLAB=true
  46
  47 # Directories
  48 #   Location libDAI headers
  49 INC=include/dai
  50 #   Location of libDAI source files
  51 SRC=src
  52 #   Destination directory of libDAI library
  53 LIB=lib
  54 #   Additional iclude paths for C compiler
  55 CCINC=-Iinclude
  56
  57 # Extensions (library, object, executable, matlab compiled MEX file)
  58 ifneq ($(OS),WINDOWS)
  59   LE=.a
  60   OE=.o
  61   EE=
  62   ME=.mexglx
  63 else
  64   LE=.lib
  65   OE=.obj
  66   EE=.exe
  67   ME=.mexglx
  68 endif
  69
  70 # Libraries
  71 ifneq ($(OS),WINDOWS)
  72   LIBS=-ldai
  73   # Additional library paths for linker
  74   CCLIB=-Llib
  75 else
  76   # For some reason, we have to add the VC library path, although it is in the environment
  77   LIBS=/link $(LIB)/libdai$(LE) /LIBPATH:"C:\Program Files\Microsoft Visual Studio 9.0\VC\ATLMFC\LIB" /LIBPATH:"C:\Program Files\Microsoft Visual Studio 9.0\VC\LIB" /LIBPATH:"C:\Program Files\Microsoft SDKs\Windows\v6.0A\lib"
  78 endif
  79
  80 # Tell the linker to link with the BOOST Program Options library
  81 ifeq ($(OS),CYGWIN)
  82   BOOSTLIBS=-lboost_program_options-gcc34-mt
  83 endif
  84 ifeq ($(OS),MACOSX)
  85   BOOSTLIBS=-lboost_program_options-mt
  86 endif
  87 ifeq ($(OS),LINUX)
  88   BOOSTLIBS=-lboost_program_options
  89 endif
  90 ifeq ($(OS),WINDOWS)
  91   BOOSTLIBS=/LIBPATH:C:\boost_1_36_0\stage\lib
  92 endif
  93
  94 # Compiler specific options
  95 ifneq ($(OS),WINDOWS)
  96   # Compile using GNU C++ Compiler
  97   CC=g++
  98   # Output filename option of the compiler
  99   CCO=-o
 100 else
 101   # Compile using Visual C++ Compiler
 102   CC=cl
 103   # Output filename option
 104   CCO=/Fe
 105 endif
 106
 107 # Flags for the C++ compiler
 108 ifneq ($(OS),WINDOWS)
 109   CCFLAGS=-O3 -Wno-deprecated -Wall -W -Wextra -fpic
 110   CCDEBUGFLAGS=-g -DDAI_DEBUG
 111 else
 112   CCFLAGS=/Iinclude /IC:\boost_1_36_0 /EHsc /Ox
 113   CCDEBUGFLAGS=/Zi -DDAI_DEBUG
 114 endif
 115
 116 ifeq ($(OS),CYGWIN)
 117   CCINC:=$(CCINC) -I/usr/local/include/boost-1_37
 118   # dynamic linking of Boost libraries seems not to work on Cygwin
 119   CCFLAGS:=$(CCFLAGS) -DCYGWIN -static
 120 endif
 121 ifeq ($(OS),MACOSX)
 122   # indicate where your boost headers and libraries are (likely where macports installs libraries)
 123   CCINC:=$(CCINC) -I/opt/local/include
 124   CCLIB:=$(CCLIB) -L/opt/local/lib
 125 endif
 126
 127 # Build targets
 128 TARGETS=tests utils $(LIB)/libdai$(LE) examples testregression
 129 ifneq ($(OS),WINDOWS)
 130   TARGETS:=$(TARGETS) doc
 131 endif
 132
 133 ifdef WITH_MATLAB
 134   ifneq ($(OS),WINDOWS)
 135     # Replace the following by the directory where Matlab has been installed
 136     MATLABDIR=/agbs/share/sw/matlab
 137     MEX=$(MATLABDIR)/bin/mex
 138     MEXFLAGS=CXX\#$(CC) CXXFLAGS\#'$(CCFLAGS)'
 139   else
 140     # Replace the following by the directory where Matlab has been installed
 141     MATLABDIR=c:\matlab
 142     MEX=$(MATLABDIR)\bin\mex
 143     MEXFLAGS=-Iinclude CXX\#$(CC) CXXFLAGS\#"/EHsc /Ox"
 144   endif
 145 endif
 146
 147
 148 ifdef DEBUG
 149   CCFLAGS:=$(CCFLAGS) $(CCDEBUGFLAGS)
 150 endif
 151 ifeq ($(OS),WINDOWS)
 152   CCFLAGS:=$(CCFLAGS) -DWINDOWS
 153 endif
 154 ifdef WITH_MATLAB
 155   TARGETS:=$(TARGETS) matlabs
 156   ifdef NEW_MATLAB
 157     MEXFLAGS:=$(MEXFLAGS) -largeArrayDims
 158   else
 159     MEXFLAGS:=$(MEXFLAGS) -DSMALLMEM
 160   endif
 161 endif
 162
 163
 164 OBJECTS:=exactinf$(OE)
 165 ifdef WITH_BP
 166   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_BP
 167   OBJECTS:=$(OBJECTS) bp$(OE)
 168 endif
 169 ifdef WITH_MF
 170   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_MF
 171   OBJECTS:=$(OBJECTS) mf$(OE)
 172 endif
 173 ifdef WITH_HAK
 174   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_HAK
 175   OBJECTS:=$(OBJECTS) hak$(OE)
 176 endif
 177 ifdef WITH_LC
 178   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_LC
 179   OBJECTS:=$(OBJECTS) lc$(OE)
 180 endif
 181 ifdef WITH_TREEEP
 182   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_TREEEP
 183   OBJECTS:=$(OBJECTS) treeep$(OE)
 184 endif
 185 ifdef WITH_JTREE
 186   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_JTREE
 187   OBJECTS:=$(OBJECTS) jtree$(OE)
 188 endif
 189 ifdef WITH_MR
 190   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_MR
 191   OBJECTS:=$(OBJECTS) mr$(OE)
 192 endif
 193 ifdef WITH_GIBBS
 194   CCFLAGS:=$(CCFLAGS) -DDAI_WITH_GIBBS
 195   OBJECTS:=$(OBJECTS) gibbs$(OE)
 196 endif
 197
 198
 199 HEADERS=$(INC)/bipgraph.h $(INC)/index.h $(INC)/var.h $(INC)/factor.h $(INC)/varset.h $(INC)/smallset.h $(INC)/prob.h $(INC)/daialg.h $(INC)/properties.h $(INC)/alldai.h $(INC)/enum.h $(INC)/exceptions.h
 200
 201
 202 CC:=$(CC) $(CCINC) $(CCLIB) $(CCFLAGS)
 203 MEX:=$(MEX) $(CCLIB) $(CCINC) $(MEXFLAGS)
 204
 205
 206 # META TARGETS
 207 ###############
 208
 209 all : $(TARGETS)
 210
 211 examples : examples/example$(EE) examples/example_bipgraph$(EE) examples/example_varset$(EE) examples/example_sprinkler$(EE)
 212
 213 matlabs : matlab/dai$(ME) matlab/dai_readfg$(ME) matlab/dai_writefg$(ME) matlab/dai_potstrength$(ME)
 214
 215 tests : tests/testdai$(EE)
 216
 217 utils : utils/createfg$(EE) utils/fg2dot$(EE) utils/fginfo$(EE)
 218
 219
 220 # OBJECTS
 221 ##########
 222
 223 bipgraph$(OE) : $(SRC)/bipgraph.cpp $(HEADERS)
 224         $(CC) -c $(SRC)/bipgraph.cpp
 225
 226 daialg$(OE) : $(SRC)/daialg.cpp $(HEADERS)
 227         $(CC) -c $(SRC)/daialg.cpp
 228
 229 exactinf$(OE) : $(SRC)/exactinf.cpp $(INC)/exactinf.h $(HEADERS)
 230         $(CC) -c $(SRC)/exactinf.cpp
 231
 232 bp$(OE) : $(SRC)/bp.cpp $(INC)/bp.h $(HEADERS)
 233         $(CC) -c $(SRC)/bp.cpp
 234
 235 lc$(OE) : $(SRC)/lc.cpp $(INC)/lc.h $(HEADERS)
 236         $(CC) -c $(SRC)/lc.cpp
 237
 238 mf$(OE) : $(SRC)/mf.cpp $(INC)/mf.h $(HEADERS)
 239         $(CC) -c $(SRC)/mf.cpp
 240
 241 factorgraph$(OE) : $(SRC)/factorgraph.cpp $(INC)/factorgraph.h $(HEADERS)
 242         $(CC) -c $(SRC)/factorgraph.cpp
 243
 244 util$(OE) : $(SRC)/util.cpp $(INC)/util.h $(HEADERS)
 245         $(CC) -c $(SRC)/util.cpp
 246
 247 regiongraph$(OE) : $(SRC)/regiongraph.cpp $(INC)/regiongraph.h $(HEADERS)
 248         $(CC) -c $(SRC)/regiongraph.cpp
 249
 250 hak$(OE) : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h
 251         $(CC) -c $(SRC)/hak.cpp
 252
 253 clustergraph$(OE) : $(SRC)/clustergraph.cpp $(INC)/clustergraph.h $(HEADERS)
 254         $(CC) -c $(SRC)/clustergraph.cpp
 255
 256 jtree$(OE) : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h
 257         $(CC) -c $(SRC)/jtree.cpp
 258
 259 treeep$(OE) : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h
 260         $(CC) -c $(SRC)/treeep.cpp
 261
 262 weightedgraph$(OE) : $(SRC)/weightedgraph.cpp $(INC)/weightedgraph.h $(HEADERS)
 263         $(CC) -c $(SRC)/weightedgraph.cpp
 264
 265 mr$(OE) : $(SRC)/mr.cpp $(INC)/mr.h $(HEADERS)
 266         $(CC) -c $(SRC)/mr.cpp
 267
 268 gibbs$(OE) : $(SRC)/gibbs.cpp $(INC)/gibbs.h $(HEADERS)
 269         $(CC) -c $(SRC)/gibbs.cpp
 270
 271 properties$(OE) : $(SRC)/properties.cpp $(HEADERS)
 272         $(CC) -c $(SRC)/properties.cpp
 273
 274 exceptions$(OE) : $(SRC)/exceptions.cpp $(HEADERS)
 275         $(CC) -c $(SRC)/exceptions.cpp
 276
 277 alldai$(OE) : $(SRC)/alldai.cpp $(HEADERS)
 278         $(CC) -c $(SRC)/alldai.cpp
 279
 280
 281 # EXAMPLES
 282 ###########
 283
 284 examples/example$(EE) : examples/example.cpp $(HEADERS) $(LIB)/libdai$(LE)
 285         $(CC) $(CCO)examples/example$(EE) examples/example.cpp $(LIBS)
 286
 287 examples/example_bipgraph$(EE) : examples/example_bipgraph.cpp $(HEADERS) $(LIB)/libdai$(LE)
 288         $(CC) $(CCO)examples/example_bipgraph$(EE) examples/example_bipgraph.cpp $(LIBS)
 289
 290 examples/example_varset$(EE) : examples/example_varset.cpp $(HEADERS) $(LIB)/libdai$(LE)
 291         $(CC) $(CCO)examples/example_varset$(EE) examples/example_varset.cpp $(LIBS)
 292
 293 examples/example_sprinkler$(EE) : examples/example_sprinkler.cpp $(HEADERS) $(LIB)/libdai$(LE)
 294         $(CC) $(CCO)examples/example_sprinkler$(EE) examples/example_sprinkler.cpp $(LIBS)
 295
 296
 297 # TESTS
 298 ########
 299
 300 tests/testdai$(EE) : tests/testdai.cpp $(HEADERS) $(LIB)/libdai$(LE)
 301         $(CC) $(CCO)tests/testdai$(EE) tests/testdai.cpp $(LIBS) $(BOOSTLIBS)
 302
 303
 304 # MATLAB INTERFACE
 305 ###################
 306
 307 matlab/dai$(ME) : $(SRC)/matlab/dai.cpp $(HEADERS) matlab$(OE) $(LIB)/libdai$(LE)
 308         $(MEX) -o matlab/dai $(SRC)/matlab/dai.cpp matlab$(OE) $(LIB)/libdai$(LE)
 309
 310 matlab/dai_readfg$(ME) : $(SRC)/matlab/dai_readfg.cpp $(HEADERS) factorgraph$(OE) matlab$(OE) exceptions$(OE)
 311         $(MEX) -o matlab/dai_readfg $(SRC)/matlab/dai_readfg.cpp factorgraph$(OE) matlab$(OE) exceptions$(OE)
 312
 313 matlab/dai_writefg$(ME) : $(SRC)/matlab/dai_writefg.cpp $(HEADERS) factorgraph$(OE) matlab$(OE) exceptions$(OE)
 314         $(MEX) -o matlab/dai_writefg $(SRC)/matlab/dai_writefg.cpp factorgraph$(OE) matlab$(OE) exceptions$(OE)
 315
 316 matlab/dai_potstrength$(ME) : $(SRC)/matlab/dai_potstrength.cpp $(HEADERS) matlab$(OE) exceptions$(OE)
 317         $(MEX) -o matlab/dai_potstrength $(SRC)/matlab/dai_potstrength.cpp matlab$(OE) exceptions$(OE)
 318
 319 matlab$(OE) : $(SRC)/matlab/matlab.cpp $(INC)/matlab/matlab.h $(HEADERS)
 320         $(MEX) -c $(SRC)/matlab/matlab.cpp
 321
 322
 323 # UTILS
 324 ########
 325
 326 utils/createfg$(EE) : utils/createfg.cpp $(HEADERS) $(LIB)/libdai$(LE)
 327         $(CC) $(CCO)utils/createfg$(EE) utils/createfg.cpp $(LIBS) $(BOOSTLIBS)
 328
 329 utils/fg2dot$(EE) : utils/fg2dot.cpp $(HEADERS) $(LIB)/libdai$(LE)
 330         $(CC) $(CCO)utils/fg2dot$(EE) utils/fg2dot.cpp $(LIBS)
 331
 332 utils/fginfo$(EE) : utils/fginfo.cpp $(HEADERS) $(LIB)/libdai$(LE)
 333         $(CC) $(CCO)utils/fginfo$(EE) utils/fginfo.cpp $(LIBS)
 334
 335
 336 # LIBRARY
 337 ##########
 338
 339 ifneq ($(OS),WINDOWS)
 340 $(LIB)/libdai$(LE) : bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) $(OBJECTS)
 341         -mkdir -p lib
 342         ar rcus $(LIB)/libdai$(LE) bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) $(OBJECTS)
 343 else
 344 $(LIB)/libdai$(LE) : bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) $(OBJECTS)
 345         -mkdir lib
 346         lib /out:$(LIB)/libdai$(LE) bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) $(OBJECTS)
 347 endif
 348
 349
 350 # REGRESSION TESTS
 351 ###################
 352
 353 ifneq ($(OS),WINDOWS)
 354 testregression : tests/testdai$(EE)
 355         @echo Starting regression test...this can take a minute or so!
 356         cd tests && ./testregression && cd ..
 357 else
 358 testregression : tests/testdai$(EE)
 359         @echo Starting regression test...this can take a minute or so!
 360         cd tests && testregression.bat && cd ..
 361 endif
 362
 363
 364 # DOCUMENTATION
 365 ################
 366
 367 doc : $(INC)/*.h $(SRC)/*.cpp examples/*.cpp doxygen.conf
 368         doxygen doxygen.conf
 369
 370
 371 # CLEAN
 372 ########
 373
 374 ifneq ($(OS),WINDOWS)
 375 .PHONY : clean
 376 clean :
 377         -rm *$(OE)
 378         -rm matlab/*$(ME)
 379         -rm examples/example$(EE) examples/example_bipgraph$(EE) examples/example_varset$(EE) examples/example_sprinkler$(EE)
 380         -rm tests/testdai$(EE)
 381         -rm utils/fg2dot$(EE) utils/createfg$(EE) utils/fginfo$(EE)
 382         -rm -R doc
 383         -rm -R lib
 384 else
 385 .PHONY : clean
 386 clean :
 387         -del *$(OE) *.ilk *.pdb *$(EE) matlab\*$(ME) examples\*$(EE) examples\*.ilk examples\*.pdb tests\testdai$(EE) tests\*.pdb tests\*.ilk utils\*$(EE) utils\*.pdb utils\*.ilk $(LIB)\libdai$(LE)
 388 endif