Added decimation algorithm DECMAP
[libdai.git] / Makefile
1 # This file is part of libDAI - http://www.libdai.org/
2 #
3 # libDAI is licensed under the terms of the GNU General Public License version
4 # 2, or (at your option) any later version. libDAI is distributed without any
5 # warranty. See the file COPYING for more details.
6 #
7 # Copyright (C) 2006-2010 Joris Mooij [joris dot mooij at libdai dot org]
8 # Copyright (C) 2006-2007 Radboud University Nijmegen, The Netherlands
9
10
11 # Load the platform independent build configuration file
12 include Makefile.ALL
13
14 # Load the local configuration from Makefile.conf
15 include Makefile.conf
16
17 # Set version and date
18 DAI_VERSION="git HEAD"
19 DAI_DATE="May 12, 2010, or later"
20
21 # Directories of libDAI sources
22 # Location of libDAI headers
23 INC=include/dai
24 # Location of libDAI source files
25 SRC=src
26 # Destination directory of libDAI library
27 LIB=lib
28
29 # Set final compiler flags
30 ifdef DEBUG
31 CCFLAGS:=$(CCFLAGS) $(CCDEBUGFLAGS)
32 else
33 CCFLAGS:=$(CCFLAGS) $(CCNODEBUGFLAGS)
34 endif
35
36 # Define build targets
37 TARGETS:=lib tests utils examples
38 ifdef WITH_MATLAB
39 TARGETS:=$(TARGETS) matlabs
40 endif
41 TARGETS:=$(TARGETS) unittests testregression testem
42 ifdef WITH_DOC
43 TARGETS:=$(TARGETS) doc
44 endif
45
46 # Define conditional build targets
47 NAMES:=graph dag bipgraph varset daialg alldai clustergraph factor factorgraph properties regiongraph util weightedgraph exceptions exactinf evidence emalg
48 ifdef WITH_BP
49 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_BP
50 NAMES:=$(NAMES) bp
51 endif
52 ifdef WITH_FBP
53 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_FBP
54 NAMES:=$(NAMES) fbp
55 endif
56 ifdef WITH_TRWBP
57 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_TRWBP
58 NAMES:=$(NAMES) trwbp
59 endif
60 ifdef WITH_MF
61 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_MF
62 NAMES:=$(NAMES) mf
63 endif
64 ifdef WITH_HAK
65 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_HAK
66 NAMES:=$(NAMES) hak
67 endif
68 ifdef WITH_LC
69 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_LC
70 NAMES:=$(NAMES) lc
71 endif
72 ifdef WITH_TREEEP
73 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_TREEEP
74 NAMES:=$(NAMES) treeep
75 endif
76 ifdef WITH_JTREE
77 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_JTREE
78 NAMES:=$(NAMES) jtree
79 endif
80 ifdef WITH_MR
81 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_MR
82 NAMES:=$(NAMES) mr
83 endif
84 ifdef WITH_GIBBS
85 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_GIBBS
86 NAMES:=$(NAMES) gibbs
87 endif
88 ifdef WITH_CBP
89 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_CBP
90 NAMES:=$(NAMES) bbp cbp bp_dual
91 endif
92 ifdef WITH_DECMAP
93 WITHFLAGS:=$(WITHFLAGS) -DDAI_WITH_DECMAP
94 NAMES:=$(NAMES) decmap
95 endif
96
97 # Define standard libDAI header dependencies, source file names and object file names
98 HEADERS=$(foreach name,graph dag bipgraph index var factor varset smallset prob daialg properties alldai enum exceptions util,$(INC)/$(name).h)
99 SOURCES:=$(foreach name,$(NAMES),$(SRC)/$(name).cpp)
100 OBJECTS:=$(foreach name,$(NAMES),$(name)$(OE))
101
102 # Setup final command for C++ compiler
103 ifneq ($(OS),WINDOWS)
104 CC:=$(CC) $(CCINC) $(CCFLAGS) $(WITHFLAGS) $(CCLIB)
105 else
106 CC:=$(CC) $(CCINC) $(CCFLAGS) $(WITHFLAGS)
107 LIBS:=$(LIBS) $(CCLIB)
108 endif
109
110 # Setup final command for MEX
111 ifdef NEW_MATLAB
112 MEXFLAGS:=$(MEXFLAGS) -largeArrayDims
113 else
114 MEXFLAGS:=$(MEXFLAGS) -DSMALLMEM
115 endif
116 MEX:=$(MEX) $(MEXINC) $(MEXFLAGS) $(WITHFLAGS) $(MEXLIB)
117
118
119 # META TARGETS
120 ###############
121
122 all : $(TARGETS)
123 @echo libDAI built successfully!
124
125 examples : examples/example$(EE) examples/example_bipgraph$(EE) examples/example_varset$(EE) examples/example_permute$(EE) examples/example_sprinkler$(EE) examples/example_sprinkler_gibbs$(EE) examples/example_sprinkler_em$(EE) examples/example_imagesegmentation$(EE)
126
127 matlabs : matlab/dai$(ME) matlab/dai_readfg$(ME) matlab/dai_writefg$(ME) matlab/dai_potstrength$(ME)
128
129 unittests : tests/unit/var_test$(EE) tests/unit/smallset_test$(EE) tests/unit/varset_test$(EE) tests/unit/graph_test$(EE) tests/unit/dag_test$(EE) tests/unit/bipgraph_test$(EE) tests/unit/weightedgraph_test$(EE) tests/unit/enum_test$(EE) tests/unit/enum_test$(EE) tests/unit/util_test$(EE) tests/unit/exceptions_test$(EE) tests/unit/properties_test$(EE) tests/unit/index_test$(EE) tests/unit/prob_test$(EE) tests/unit/factor_test$(EE) tests/unit/factorgraph_test$(EE) tests/unit/clustergraph_test$(EE) tests/unit/regiongraph_test$(EE) tests/unit/daialg_test$(EE) tests/unit/alldai_test$(EE)
130 echo Running unit tests...
131 tests/unit/var_test$(EE)
132 tests/unit/smallset_test$(EE)
133 tests/unit/varset_test$(EE)
134 tests/unit/graph_test$(EE)
135 tests/unit/dag_test$(EE)
136 tests/unit/bipgraph_test$(EE)
137 tests/unit/weightedgraph_test$(EE)
138 tests/unit/enum_test$(EE)
139 tests/unit/util_test$(EE)
140 tests/unit/exceptions_test$(EE)
141 tests/unit/properties_test$(EE)
142 tests/unit/index_test$(EE)
143 tests/unit/prob_test$(EE)
144 tests/unit/factor_test$(EE)
145 tests/unit/factorgraph_test$(EE)
146 tests/unit/clustergraph_test$(EE)
147 tests/unit/regiongraph_test$(EE)
148 tests/unit/daialg_test$(EE)
149 tests/unit/alldai_test$(EE)
150
151 tests : tests/testdai$(EE) tests/testem/testem$(EE) tests/testbbp$(EE) $(unittests)
152
153 utils : utils/createfg$(EE) utils/fg2dot$(EE) utils/fginfo$(EE) utils/uai2fg$(EE)
154
155 lib: $(LIB)/libdai$(LE)
156
157
158 # OBJECTS
159 ##########
160
161 %$(OE) : $(SRC)/%.cpp $(INC)/%.h $(HEADERS)
162 $(CC) -c $<
163
164 bbp$(OE) : $(SRC)/bbp.cpp $(INC)/bbp.h $(INC)/bp_dual.h $(HEADERS)
165 $(CC) -c $<
166
167 cbp$(OE) : $(SRC)/cbp.cpp $(INC)/cbp.h $(INC)/bbp.h $(INC)/bp_dual.h $(HEADERS)
168 $(CC) -c $<
169
170 hak$(OE) : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h
171 $(CC) -c $<
172
173 jtree$(OE) : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h
174 $(CC) -c $<
175
176 treeep$(OE) : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h
177 $(CC) -c $<
178
179 emalg$(OE) : $(SRC)/emalg.cpp $(INC)/emalg.h $(INC)/evidence.h $(HEADERS)
180 $(CC) -c $<
181
182 decmap$(OE) : $(SRC)/decmap.cpp $(INC)/decmap.h $(HEADERS)
183 $(CC) -c $<
184
185
186 # EXAMPLES
187 ###########
188
189 examples/%$(EE) : examples/%.cpp $(HEADERS) $(LIB)/libdai$(LE)
190 $(CC) $(CCO)$@ $< $(LIBS)
191
192 examples/example_sprinkler_gibbs$(EE) : examples/example_sprinkler_gibbs.cpp $(HEADERS) $(LIB)/libdai$(LE)
193 ifdef WITH_GIBBS
194 $(CC) $(CCO)$@ $< $(LIBS)
195 else
196 @echo Skipping $@
197 endif
198
199 examples/example_imagesegmentation$(EE) : examples/example_imagesegmentation.cpp $(HEADERS) $(LIB)/libdai$(LE)
200 -$(CC) $(CIMGINC) $(CCO)$@ $< $(LIBS) $(CIMGLIBS)
201
202
203 # UNIT TESTS
204 #############
205
206 tests/unit/%$(EE) : tests/unit/%.cpp $(HEADERS) $(LIB)/libdai$(LE)
207 ifneq ($(OS),WINDOWS)
208 $(CC) -DBOOST_TEST_DYN_LINK $(CCO)$@ $< $(LIBS) $(BOOSTLIBS_UTF)
209 else
210 $(CC) $(CCO)$@ $< $(LIBS) $(BOOSTLIBS_UTF) /SUBSYSTEM:CONSOLE
211 endif
212
213
214 # TESTS
215 ########
216
217 tests/testdai$(EE) : tests/testdai.cpp $(HEADERS) $(LIB)/libdai$(LE)
218 $(CC) $(CCO)$@ $< $(LIBS) $(BOOSTLIBS_PO)
219 tests/testem/testem$(EE) : tests/testem/testem.cpp $(HEADERS) $(LIB)/libdai$(LE)
220 $(CC) $(CCO)$@ $< $(LIBS) $(BOOSTLIBS_PO)
221 tests/testbbp$(EE) : tests/testbbp.cpp $(HEADERS) $(LIB)/libdai$(LE)
222 ifdef WITH_CBP
223 $(CC) $(CCO)$@ $< $(LIBS)
224 else
225 @echo Skipping $@
226 endif
227
228
229 # MATLAB INTERFACE
230 ###################
231
232 matlab/dai$(ME) : $(SRC)/matlab/dai.cpp $(HEADERS) $(SOURCES) $(SRC)/matlab/matlab.cpp
233 $(MEX) -output $@ $< $(SRC)/matlab/matlab.cpp $(SOURCES)
234
235 matlab/dai_readfg$(ME) : $(SRC)/matlab/dai_readfg.cpp $(HEADERS) $(SRC)/matlab/matlab.cpp $(SRC)/factorgraph.cpp $(SRC)/exceptions.cpp $(SRC)/bipgraph.cpp $(SRC)/graph.cpp $(SRC)/factor.cpp $(SRC)/util.cpp
236 $(MEX) -output $@ $< $(SRC)/matlab/matlab.cpp $(SRC)/factorgraph.cpp $(SRC)/exceptions.cpp $(SRC)/bipgraph.cpp $(SRC)/graph.cpp $(SRC)/factor.cpp $(SRC)/util.cpp
237
238 matlab/dai_writefg$(ME) : $(SRC)/matlab/dai_writefg.cpp $(HEADERS) $(SRC)/matlab/matlab.cpp $(SRC)/factorgraph.cpp $(SRC)/exceptions.cpp $(SRC)/bipgraph.cpp $(SRC)/graph.cpp $(SRC)/factor.cpp $(SRC)/util.cpp
239 $(MEX) -output $@ $< $(SRC)/matlab/matlab.cpp $(SRC)/factorgraph.cpp $(SRC)/exceptions.cpp $(SRC)/bipgraph.cpp $(SRC)/graph.cpp $(SRC)/factor.cpp $(SRC)/util.cpp
240
241 matlab/dai_potstrength$(ME) : $(SRC)/matlab/dai_potstrength.cpp $(HEADERS) $(SRC)/matlab/matlab.cpp $(SRC)/exceptions.cpp
242 $(MEX) -output $@ $< $(SRC)/matlab/matlab.cpp $(SRC)/exceptions.cpp
243
244
245 # UTILS
246 ########
247
248 utils/createfg$(EE) : utils/createfg.cpp $(HEADERS) $(LIB)/libdai$(LE)
249 $(CC) $(CCO)$@ $< $(LIBS) $(BOOSTLIBS_PO)
250
251 utils/fg2dot$(EE) : utils/fg2dot.cpp $(HEADERS) $(LIB)/libdai$(LE)
252 $(CC) $(CCO)$@ $< $(LIBS)
253
254 utils/fginfo$(EE) : utils/fginfo.cpp $(HEADERS) $(LIB)/libdai$(LE)
255 $(CC) $(CCO)$@ $< $(LIBS)
256
257 utils/uai2fg$(EE) : utils/uai2fg.cpp $(HEADERS) $(LIB)/libdai$(LE)
258 $(CC) $(CCO)$@ $< $(LIBS)
259
260
261 # LIBRARY
262 ##########
263
264 ifneq ($(OS),WINDOWS)
265 $(LIB)/libdai$(LE) : $(OBJECTS)
266 -mkdir -p lib
267 ar rcus $(LIB)/libdai$(LE) $(OBJECTS)
268 else
269 $(LIB)/libdai$(LE) : $(OBJECTS)
270 -mkdir lib
271 lib /out:$(LIB)/libdai$(LE) $(OBJECTS)
272 endif
273
274
275 # REGRESSION TESTS
276 ###################
277
278 testregression : tests/testdai$(EE)
279 @echo Starting regression test...this can take a minute or so!
280 ifneq ($(OS),WINDOWS)
281 cd tests && ./testregression && cd ..
282 else
283 cd tests && testregression.bat && cd ..
284 endif
285
286 testem : tests/testem/testem$(EE)
287 @echo Starting EM tests
288 ifneq ($(OS),WINDOWS)
289 cd tests/testem && ./runtests && cd ../..
290 else
291 cd tests\testem && runtests && cd ..\..
292 endif
293
294
295 # DOCUMENTATION
296 ################
297
298 doc : $(INC)/*.h $(SRC)/*.cpp examples/*.cpp doxygen.conf
299 doxygen doxygen.conf
300
301 README : doc scripts/makeREADME
302 DAI_VERSION=$(DAI_VERSION) DAI_DATE=$(DAI_DATE) scripts/makeREADME
303
304 TAGS :
305 etags src/*.cpp include/dai/*.h tests/*.cpp utils/*.cpp
306 ctags src/*.cpp include/dai/*.h tests/*.cpp utils/*.cpp
307
308
309 # CLEAN
310 ########
311
312 .PHONY : clean
313 ifneq ($(OS),WINDOWS)
314 clean :
315 -rm $(OBJECTS)
316 -rm matlab/*$(ME)
317 -rm examples/example$(EE) examples/example_bipgraph$(EE) examples/example_varset$(EE) examples/example_permute$(EE) examples/example_sprinkler$(EE) examples/example_sprinkler_gibbs$(EE) examples/example_sprinkler_em$(EE) examples/example_imagesegmentation$(EE)
318 -rm tests/testdai$(EE) tests/testem/testem$(EE) tests/testbbp$(EE)
319 -rm tests/unit/var_test$(EE) tests/unit/smallset_test$(EE) tests/unit/varset_test$(EE) tests/unit/graph_test$(EE) tests/unit/dag_test$(EE) tests/unit/bipgraph_test$(EE) tests/unit/weightedgraph_test$(EE) tests/unit/enum_test$(EE) tests/unit/util_test$(EE) tests/unit/exceptions_test$(EE) tests/unit/properties_test$(EE) tests/unit/index_test$(EE) tests/unit/prob_test$(EE) tests/unit/factor_test$(EE) tests/unit/factorgraph_test$(EE) tests/unit/clustergraph_test$(EE) tests/unit/regiongraph_test$(EE) tests/unit/daialg_test$(EE) tests/unit/alldai_test$(EE)
320 -rm factorgraph_test.fg alldai_test.aliases
321 -rm utils/fg2dot$(EE) utils/createfg$(EE) utils/fginfo$(EE) utils/uai2fg$(EE)
322 -rm -R doc
323 -rm -R lib
324 else
325 clean :
326 -del *.obj
327 -del *.ilk
328 -del *.pdb
329 -del matlab\*$(ME)
330 -del examples\*$(EE)
331 -del examples\*$(EE).manifest
332 -del examples\*.ilk
333 -del examples\*.pdb
334 -del tests\*$(EE)
335 -del tests\*$(EE).manifest
336 -del tests\*.pdb
337 -del tests\*.ilk
338 -del tests\testem\*$(EE)
339 -del tests\testem\*$(EE).manifest
340 -del tests\testem\*.pdb
341 -del tests\testem\*.ilk
342 -del utils\*$(EE)
343 -del utils\*$(EE).manifest
344 -del utils\*.pdb
345 -del utils\*.ilk
346 -del tests\unit\*_test$(EE)
347 -del tests\unit\*_test$(EE).manifest
348 -del tests\unit\*_test.pdb
349 -del tests\unit\*_test.ilk
350 -del factorgraph_test.fg
351 -del alldai_test.aliases
352 -del $(LIB)\libdai$(LE)
353 -rmdir lib
354 endif