Makefile

   1 #   Copyright (C) 2006-2008  Joris Mooij  [j dot mooij at science dot ru dot nl]
   2 #   Radboud University Nijmegen, The Netherlands
   3 #
   4 #   This file is part of libDAI.
   5 #
   6 #   libDAI is free software; you can redistribute it and/or modify
   7 #   it under the terms of the GNU General Public License as published by
   8 #   the Free Software Foundation; either version 2 of the License, or
   9 #   (at your option) any later version.
  10 #
  11 #   libDAI is distributed in the hope that it will be useful,
  12 #   but WITHOUT ANY WARRANTY; without even the implied warranty of
  13 #   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  14 #   GNU General Public License for more details.
  15 #
  16 #   You should have received a copy of the GNU General Public License
  17 #   along with libDAI; if not, write to the Free Software
  18 #   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
  19
  20
  21 # Enable/disable various approximate inference methods
  22 WITH_BP = true
  23 WITH_MF = true
  24 WITH_HAK = true
  25 WITH_LC = true
  26 WITH_TREEEP = true
  27 WITH_JTREE = true
  28 WITH_MR = true
  29 DEBUG = true
  30 NEW_MATLAB = true
  31 WITH_MATLAB =
  32
  33 # Directories
  34 INC = include/dai
  35 SRC = src
  36 LIB = lib
  37
  38 # We use the BOOST Program Options library
  39 BOOSTFLAGS = -lboost_program_options
  40
  41 # Compile using GNU C++ Compiler
  42 CC = g++
  43
  44 # Flags for the C++ compiler
  45 CCFLAGS = -Wall -W -Wextra -fpic -I./include -Llib -O3 #-pg #-static #-DVERBOSE
  46 ifdef DEBUG
  47 CCFLAGS := $(CCFLAGS) -g -DDAI_DEBUG
  48 else
  49 CCFLAGS := $(CCFLAGS)
  50 endif
  51
  52 ifdef WITH_BP
  53 CCFLAGS := $(CCFLAGS) -DWITH_BP
  54 OBJECTS := $(OBJECTS) bp.o
  55 endif
  56 ifdef WITH_MF
  57 CCFLAGS := $(CCFLAGS) -DWITH_MF
  58 OBJECTS := $(OBJECTS) mf.o
  59 endif
  60 ifdef WITH_HAK
  61 CCFLAGS := $(CCFLAGS) -DWITH_HAK
  62 OBJECTS := $(OBJECTS) hak.o
  63 endif
  64 ifdef WITH_LC
  65 CCFLAGS := $(CCFLAGS) -DWITH_LC
  66 OBJECTS := $(OBJECTS) lc.o
  67 endif
  68 ifdef WITH_TREEEP
  69 CCFLAGS := $(CCFLAGS) -DWITH_TREEEP
  70 OBJECTS := $(OBJECTS) treeep.o
  71 endif
  72 ifdef WITH_JTREE
  73 CCFLAGS := $(CCFLAGS) -DWITH_JTREE
  74 OBJECTS := $(OBJECTS) jtree.o
  75 endif
  76 ifdef WITH_MR
  77 CCFLAGS := $(CCFLAGS) -DWITH_MR
  78 OBJECTS := $(OBJECTS) mr.o
  79 endif
  80
  81 ifdef WITH_MATLAB
  82 # Replace the following by the directory where Matlab has been installed
  83 MATLABDIR = /opt/matlab/bin
  84 # Replace the following with the extension of compiled MEX files on this platform, e.g. .mexglx for x86
  85 MEXEXT = .mexglx
  86 MEX = $(MATLABDIR)/mex
  87 MEXFLAGS = -I.
  88 ifdef DEBUG
  89 MEXFLAGS := $(MEXFLAGS) -g -DDAI_DEBUG
  90 endif
  91 ifdef NEW_MATLAB
  92 MEXFLAGS := $(MEXFLAGS) -largeArrayDims
  93 else
  94 MEXFLAGS := $(MEXFLAGS) -DSMALLMEM
  95 endif
  96 endif
  97
  98 HEADERS = $(INC)/bipgraph.h $(INC)/diffs.h $(INC)/index.h $(INC)/var.h $(INC)/factor.h $(INC)/varset.h $(INC)/prob.h $(INC)/daialg.h $(INC)/properties.h $(INC)/alldai.h $(INC)/enum.h $(INC)/x2x.h
  99
 100 TARGETS = tests utils $(LIB)/libdai.a example testregression doc
 101 ifdef WITH_MATLAB
 102 TARGETS := $(TARGETS) matlabs
 103 endif
 104 all : $(TARGETS)
 105         echo -e "\a"
 106
 107 matlabs : matlab/dai.$(MEXEXT) matlab/dai_readfg.$(MEXEXT) matlab/dai_writefg.$(MEXEXT) matlab/dai_removeshortloops.$(MEXEXT) matlab/dai_potstrength.$(MEXEXT)
 108
 109 $(LIB)/libdai.a : daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o $(OBJECTS)
 110         ar rcs $(LIB)/libdai.a daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o $(OBJECTS)
 111
 112 tests : tests/test
 113
 114 utils : utils/createfg utils/fg2dot utils/remove_short_loops utils/fginfo
 115
 116 testregression : tests/test
 117         echo Testing...this can take a while...
 118         cd tests; time ./testregression; cd ..
 119
 120 doc : $(INC)/*.h $(SRC)/*.cpp doxygen.conf
 121         doxygen doxygen.conf
 122
 123 clean :
 124         rm *.o example matlab/*.$(MEXEXT) matlab/*.o tests/test utils/fg2dot utils/createfg utils/remove_short_loops utils/fginfo $(LIB)/libdai.a; echo
 125         rm -R doc; echo
 126
 127
 128 daialg.o : $(SRC)/daialg.cpp $(HEADERS)
 129         $(CC) $(CCFLAGS) -c $(SRC)/daialg.cpp
 130
 131 bp.o : $(SRC)/bp.cpp $(INC)/bp.h $(HEADERS)
 132         $(CC) $(CCFLAGS) -c $(SRC)/bp.cpp
 133
 134 lc.o : $(SRC)/lc.cpp $(INC)/lc.h $(HEADERS)
 135         $(CC) $(CCFLAGS) -c $(SRC)/lc.cpp
 136
 137 mf.o : $(SRC)/mf.cpp $(INC)/mf.h $(HEADERS)
 138         $(CC) $(CCFLAGS) -c $(SRC)/mf.cpp
 139
 140 factorgraph.o : $(SRC)/factorgraph.cpp $(INC)/factorgraph.h $(HEADERS)
 141         $(CC) $(CCFLAGS) -c $(SRC)/factorgraph.cpp
 142
 143 util.o : $(SRC)/util.cpp $(INC)/util.h $(HEADERS)
 144         $(CC) $(CCFLAGS) -c $(SRC)/util.cpp
 145
 146 regiongraph.o : $(SRC)/regiongraph.cpp $(INC)/regiongraph.h $(HEADERS)
 147         $(CC) $(CCFLAGS) -c $(SRC)/regiongraph.cpp
 148
 149 hak.o : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h
 150         $(CC) $(CCFLAGS) -c $(SRC)/hak.cpp
 151
 152 clustergraph.o : $(SRC)/clustergraph.cpp $(INC)/clustergraph.h $(HEADERS)
 153         $(CC) $(CCFLAGS) -c $(SRC)/clustergraph.cpp
 154
 155 jtree.o : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h
 156         $(CC) $(CCFLAGS) -c $(SRC)/jtree.cpp
 157
 158 treeep.o : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h
 159         $(CC) $(CCFLAGS) -c $(SRC)/treeep.cpp
 160
 161 weightedgraph.o : $(SRC)/weightedgraph.cpp $(INC)/weightedgraph.h $(HEADERS)
 162         $(CC) $(CCFLAGS) -c $(SRC)/weightedgraph.cpp
 163
 164 mr.o : $(SRC)/mr.cpp $(INC)/mr.h $(HEADERS)
 165         $(CC) $(CCFLAGS) -c $(SRC)/mr.cpp
 166
 167 properties.o : $(SRC)/properties.cpp $(HEADERS)
 168         $(CC) $(CCFLAGS) -c $(SRC)/properties.cpp
 169
 170 alldai.o : $(SRC)/alldai.cpp $(HEADERS)
 171         $(CC) $(CCFLAGS) -c $(SRC)/alldai.cpp
 172
 173 x2x.o : $(SRC)/x2x.cpp $(HEADERS)
 174         $(CC) $(CCFLAGS) -c $(SRC)/x2x.cpp
 175
 176 # EXAMPLE
 177 ##########
 178
 179 example : example.cpp $(HEADERS) $(LIB)/libdai.a
 180         $(CC) $(CCFLAGS) -o example example.cpp -ldai
 181
 182 # TESTS
 183 ########
 184
 185 tests/test : tests/test.cpp $(HEADERS) $(LIB)/libdai.a
 186         $(CC) $(CCFLAGS) -o tests/test tests/test.cpp -ldai $(BOOSTFLAGS)
 187
 188
 189 # MATLAB INTERFACE
 190 ###################
 191
 192 matlab/dai.$(MEXEXT) : matlab/dai.cpp $(HEADERS) matlab/matlab.o $(LIB)/libdai.a
 193         $(MEX) $(MEXFLAGS) -o matlab/dai matlab/dai.cpp matlab/matlab.o $(LIB)/libdai.a
 194
 195 matlab/dai_readfg.$(MEXEXT) : matlab/dai_readfg.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 196         $(MEX) $(MEXFLAGS) -o matlab/dai_readfg matlab/dai_readfg.cpp factorgraph.o matlab/matlab.o
 197
 198 matlab/dai_writefg.$(MEXEXT) : matlab/dai_writefg.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 199         $(MEX) $(MEXFLAGS) -o matlab/dai_writefg matlab/dai_writefg.cpp factorgraph.o matlab/matlab.o
 200
 201 matlab/dai_removeshortloops.$(MEXEXT) : matlab/dai_removeshortloops.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 202         $(MEX) $(MEXFLAGS) -o matlab/dai_removeshortloops matlab/dai_removeshortloops.cpp factorgraph.o matlab/matlab.o
 203
 204 matlab/dai_potstrength.$(MEXEXT) : matlab/dai_potstrength.cpp $(HEADERS) matlab/matlab.o
 205         $(MEX) $(MEXFLAGS) -o matlab/dai_potstrength matlab/dai_potstrength.cpp matlab/matlab.o
 206
 207 matlab/matlab.o : matlab/matlab.cpp matlab/matlab.h $(HEADERS)
 208         $(MEX) $(MEXFLAGS) -outdir matlab -c matlab/matlab.cpp
 209
 210
 211 # UTILS
 212 ########
 213
 214 utils/createfg : utils/createfg.cpp $(HEADERS) factorgraph.o weightedgraph.o util.o
 215         $(CC) $(CCFLAGS) -o utils/createfg utils/createfg.cpp factorgraph.o weightedgraph.o util.o $(BOOSTFLAGS)
 216
 217 utils/fg2dot : utils/fg2dot.cpp $(HEADERS) factorgraph.o
 218         $(CC) $(CCFLAGS) -o utils/fg2dot utils/fg2dot.cpp factorgraph.o
 219
 220 utils/remove_short_loops : utils/remove_short_loops.cpp $(HEADERS) factorgraph.o
 221         $(CC) $(CCFLAGS) -o utils/remove_short_loops utils/remove_short_loops.cpp factorgraph.o
 222
 223 utils/fginfo : utils/fginfo.cpp $(HEADERS) factorgraph.o
 224         $(CC) $(CCFLAGS) -o utils/fginfo utils/fginfo.cpp factorgraph.o