Makefile

   1 #   Copyright (C) 2006-2008  Joris Mooij  [j dot mooij at science dot ru dot nl]
   2 #   Radboud University Nijmegen, The Netherlands
   3 #
   4 #   This file is part of libDAI.
   5 #
   6 #   libDAI is free software; you can redistribute it and/or modify
   7 #   it under the terms of the GNU General Public License as published by
   8 #   the Free Software Foundation; either version 2 of the License, or
   9 #   (at your option) any later version.
  10 #
  11 #   libDAI is distributed in the hope that it will be useful,
  12 #   but WITHOUT ANY WARRANTY; without even the implied warranty of
  13 #   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  14 #   GNU General Public License for more details.
  15 #
  16 #   You should have received a copy of the GNU General Public License
  17 #   along with libDAI; if not, write to the Free Software
  18 #   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
  19
  20
  21 # Enable/disable various approximate inference methods
  22 WITH_BP = true
  23 WITH_MF = true
  24 WITH_HAK = true
  25 WITH_LC = true
  26 WITH_TREEEP = true
  27 WITH_JTREE = true
  28 WITH_MR = true
  29 # Build with debug info?
  30 DEBUG = true
  31 # Build matlab interface?
  32 WITH_MATLAB =
  33 # New/old matlab version?
  34 NEW_MATLAB = true
  35 # Windows or linux (default)?
  36 WINDOWS =
  37
  38 # Directories
  39 INC = include/dai
  40 SRC = src
  41 LIB = lib
  42
  43 # We use the BOOST Program Options library
  44 BOOSTFLAGS = -lboost_program_options
  45
  46 # Compile using GNU C++ Compiler
  47 CC = g++
  48
  49 # Flags for the C++ compiler
  50 CCFLAGS = -Wall -W -Wextra -fpic -I./include -Llib -O3 #-pg #-static #-DVERBOSE
  51 ifdef DEBUG
  52 CCFLAGS := $(CCFLAGS) -g -DDAI_DEBUG
  53 else
  54 CCFLAGS := $(CCFLAGS)
  55 endif
  56
  57 ifdef WITH_BP
  58 CCFLAGS := $(CCFLAGS) -DWITH_BP
  59 OBJECTS := $(OBJECTS) bp.o
  60 endif
  61 ifdef WITH_MF
  62 CCFLAGS := $(CCFLAGS) -DWITH_MF
  63 OBJECTS := $(OBJECTS) mf.o
  64 endif
  65 ifdef WITH_HAK
  66 CCFLAGS := $(CCFLAGS) -DWITH_HAK
  67 OBJECTS := $(OBJECTS) hak.o
  68 endif
  69 ifdef WITH_LC
  70 CCFLAGS := $(CCFLAGS) -DWITH_LC
  71 OBJECTS := $(OBJECTS) lc.o
  72 endif
  73 ifdef WITH_TREEEP
  74 CCFLAGS := $(CCFLAGS) -DWITH_TREEEP
  75 OBJECTS := $(OBJECTS) treeep.o
  76 endif
  77 ifdef WITH_JTREE
  78 CCFLAGS := $(CCFLAGS) -DWITH_JTREE
  79 OBJECTS := $(OBJECTS) jtree.o
  80 endif
  81 ifdef WITH_MR
  82 CCFLAGS := $(CCFLAGS) -DWITH_MR
  83 OBJECTS := $(OBJECTS) mr.o
  84 endif
  85
  86 ifdef WITH_MATLAB
  87 # Replace the following by the directory where Matlab has been installed
  88 MATLABDIR = /opt/matlab/bin
  89 # Replace the following with the extension of compiled MEX files on this platform, e.g. .mexglx for x86
  90 MEXEXT = .mexglx
  91 MEX = $(MATLABDIR)/mex
  92 MEXFLAGS = -I.
  93 ifdef DEBUG
  94 MEXFLAGS := $(MEXFLAGS) -g -DDAI_DEBUG
  95 endif
  96 ifdef NEW_MATLAB
  97 MEXFLAGS := $(MEXFLAGS) -largeArrayDims
  98 else
  99 MEXFLAGS := $(MEXFLAGS) -DSMALLMEM
 100 endif
 101 endif
 102
 103 HEADERS = $(INC)/bipgraph.h $(INC)/diffs.h $(INC)/index.h $(INC)/var.h $(INC)/factor.h $(INC)/varset.h $(INC)/prob.h $(INC)/daialg.h $(INC)/properties.h $(INC)/alldai.h $(INC)/enum.h $(INC)/x2x.h
 104
 105 TARGETS = tests utils $(LIB)/libdai.a example testregression doc
 106 ifdef WITH_MATLAB
 107 TARGETS := $(TARGETS) matlabs
 108 endif
 109 all : $(TARGETS)
 110         echo -e "\a"
 111
 112 matlabs : matlab/dai.$(MEXEXT) matlab/dai_readfg.$(MEXEXT) matlab/dai_writefg.$(MEXEXT) matlab/dai_removeshortloops.$(MEXEXT) matlab/dai_potstrength.$(MEXEXT)
 113
 114 $(LIB)/libdai.a : daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o $(OBJECTS)
 115         ar rcs $(LIB)/libdai.a daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o $(OBJECTS)
 116
 117 tests : tests/test
 118
 119 utils : utils/createfg utils/fg2dot utils/remove_short_loops utils/fginfo
 120
 121 testregression : tests/test
 122         echo Testing...this can take a while...
 123         cd tests; time ./testregression; cd ..
 124
 125 doc : $(INC)/*.h $(SRC)/*.cpp doxygen.conf
 126         doxygen doxygen.conf
 127
 128 clean :
 129         rm *.o example matlab/*.$(MEXEXT) matlab/*.o tests/test utils/fg2dot utils/createfg utils/remove_short_loops utils/fginfo $(LIB)/libdai.a; echo
 130         rm -R doc; echo
 131
 132
 133 daialg.o : $(SRC)/daialg.cpp $(HEADERS)
 134         $(CC) $(CCFLAGS) -c $(SRC)/daialg.cpp
 135
 136 bp.o : $(SRC)/bp.cpp $(INC)/bp.h $(HEADERS)
 137         $(CC) $(CCFLAGS) -c $(SRC)/bp.cpp
 138
 139 lc.o : $(SRC)/lc.cpp $(INC)/lc.h $(HEADERS)
 140         $(CC) $(CCFLAGS) -c $(SRC)/lc.cpp
 141
 142 mf.o : $(SRC)/mf.cpp $(INC)/mf.h $(HEADERS)
 143         $(CC) $(CCFLAGS) -c $(SRC)/mf.cpp
 144
 145 factorgraph.o : $(SRC)/factorgraph.cpp $(INC)/factorgraph.h $(HEADERS)
 146         $(CC) $(CCFLAGS) -c $(SRC)/factorgraph.cpp
 147
 148 util.o : $(SRC)/util.cpp $(INC)/util.h $(HEADERS)
 149         $(CC) $(CCFLAGS) -c $(SRC)/util.cpp
 150
 151 regiongraph.o : $(SRC)/regiongraph.cpp $(INC)/regiongraph.h $(HEADERS)
 152         $(CC) $(CCFLAGS) -c $(SRC)/regiongraph.cpp
 153
 154 hak.o : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h
 155         $(CC) $(CCFLAGS) -c $(SRC)/hak.cpp
 156
 157 clustergraph.o : $(SRC)/clustergraph.cpp $(INC)/clustergraph.h $(HEADERS)
 158         $(CC) $(CCFLAGS) -c $(SRC)/clustergraph.cpp
 159
 160 jtree.o : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h
 161         $(CC) $(CCFLAGS) -c $(SRC)/jtree.cpp
 162
 163 treeep.o : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h
 164         $(CC) $(CCFLAGS) -c $(SRC)/treeep.cpp
 165
 166 weightedgraph.o : $(SRC)/weightedgraph.cpp $(INC)/weightedgraph.h $(HEADERS)
 167         $(CC) $(CCFLAGS) -c $(SRC)/weightedgraph.cpp
 168
 169 mr.o : $(SRC)/mr.cpp $(INC)/mr.h $(HEADERS)
 170         $(CC) $(CCFLAGS) -c $(SRC)/mr.cpp
 171
 172 properties.o : $(SRC)/properties.cpp $(HEADERS)
 173         $(CC) $(CCFLAGS) -c $(SRC)/properties.cpp
 174
 175 alldai.o : $(SRC)/alldai.cpp $(HEADERS)
 176         $(CC) $(CCFLAGS) -c $(SRC)/alldai.cpp
 177
 178 x2x.o : $(SRC)/x2x.cpp $(HEADERS)
 179         $(CC) $(CCFLAGS) -c $(SRC)/x2x.cpp
 180
 181 # EXAMPLE
 182 ##########
 183
 184 example : example.cpp $(HEADERS) $(LIB)/libdai.a
 185         $(CC) $(CCFLAGS) -o example example.cpp -ldai
 186
 187 # TESTS
 188 ########
 189
 190 tests/test : tests/test.cpp $(HEADERS) $(LIB)/libdai.a
 191         $(CC) $(CCFLAGS) -o tests/test tests/test.cpp -ldai $(BOOSTFLAGS)
 192
 193
 194 # MATLAB INTERFACE
 195 ###################
 196
 197 matlab/dai.$(MEXEXT) : matlab/dai.cpp $(HEADERS) matlab/matlab.o $(LIB)/libdai.a
 198         $(MEX) $(MEXFLAGS) -o matlab/dai matlab/dai.cpp matlab/matlab.o $(LIB)/libdai.a
 199
 200 matlab/dai_readfg.$(MEXEXT) : matlab/dai_readfg.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 201         $(MEX) $(MEXFLAGS) -o matlab/dai_readfg matlab/dai_readfg.cpp factorgraph.o matlab/matlab.o
 202
 203 matlab/dai_writefg.$(MEXEXT) : matlab/dai_writefg.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 204         $(MEX) $(MEXFLAGS) -o matlab/dai_writefg matlab/dai_writefg.cpp factorgraph.o matlab/matlab.o
 205
 206 matlab/dai_removeshortloops.$(MEXEXT) : matlab/dai_removeshortloops.cpp $(HEADERS) factorgraph.o matlab/matlab.o
 207         $(MEX) $(MEXFLAGS) -o matlab/dai_removeshortloops matlab/dai_removeshortloops.cpp factorgraph.o matlab/matlab.o
 208
 209 matlab/dai_potstrength.$(MEXEXT) : matlab/dai_potstrength.cpp $(HEADERS) matlab/matlab.o
 210         $(MEX) $(MEXFLAGS) -o matlab/dai_potstrength matlab/dai_potstrength.cpp matlab/matlab.o
 211
 212 matlab/matlab.o : matlab/matlab.cpp matlab/matlab.h $(HEADERS)
 213         $(MEX) $(MEXFLAGS) -outdir matlab -c matlab/matlab.cpp
 214
 215
 216 # UTILS
 217 ########
 218
 219 utils/createfg : utils/createfg.cpp $(HEADERS) factorgraph.o weightedgraph.o util.o
 220         $(CC) $(CCFLAGS) -o utils/createfg utils/createfg.cpp factorgraph.o weightedgraph.o util.o $(BOOSTFLAGS)
 221
 222 utils/fg2dot : utils/fg2dot.cpp $(HEADERS) factorgraph.o
 223         $(CC) $(CCFLAGS) -o utils/fg2dot utils/fg2dot.cpp factorgraph.o
 224
 225 utils/remove_short_loops : utils/remove_short_loops.cpp $(HEADERS) factorgraph.o
 226         $(CC) $(CCFLAGS) -o utils/remove_short_loops utils/remove_short_loops.cpp factorgraph.o
 227
 228 utils/fginfo : utils/fginfo.cpp $(HEADERS) factorgraph.o
 229         $(CC) $(CCFLAGS) -o utils/fginfo utils/fginfo.cpp factorgraph.o