STATUS

   1 - Idea: a FactorGraph and a RegionGraph are often equipped with
   2 extra properties for nodes and edges. The code to initialize those
   3 is often quite similar; maybe this can be abstracted to classes
   4 like ExtFactorGraph and ExtRegionGraph (Ext stands for Extended), e.g.
   5 template <typename NodeProperties, typename EdgeProperties>
   6 class ExtFactorGraph : public FactorGraph {
   7         public:
   8                 std::vector<NodeProperties>               nodeProps;
   9                 std::vector<std::vector<EdgeProperties> > edgeProps;
  10         // blabla
  11 }
  12 A disadvantage of this approach may be worse cachability.
  13 - BipartiteGraph::isConnected should be optimized.
  14 - http://www.boost.org/development/requirements.html#Design_and_Programming
  15 - Would it be a good idea to cache second-order neighborhoods (delta's) in BipGraph?
  16 - Would it be a good idea to add the variable label -> index hashmap in FactorGraph,
  17   to replace the linear searches that are performed every time for findVar()?
  18   No, a better idea is to avoid calls to findVar() as much as possible.
  19 - Can the FactorGraph constructors be optimized further?
  20 - Remove x2x?
  21
  22 TODO FOR RELEASE:
  23 - Test Visual C++ compatibility
  24 - Figure out which libraries are required and document in README
  25   boost headers, boost::program_options library, boost::graph library,
  26   boost::math library (under Windows)
  27 - Change email address
  28
  29 FILES IN SVN HEAD THAT ARE NO LONGER RELEVANT FOR GIT MASTER:
  30 diffs.h
  31 index.h
  32 util.h
  33 util.cpp
  34 bipgraph.h
  35 weightedgraph.h
  36 weightedgraph.cpp
  37 clustergraph.h
  38 clustergraph.cpp
  39 varset.h
  40 var.h
  41 utils/createfg.cpp
  42 exceptions.h
  43 exceptions.cpp
  44 enum.h
  45 doxygen.conf
  46 example.cpp
  47 FILEFORMAT
  48 Makefile
  49 exact.h
  50 exact.cpp
  51 alldai.h
  52 alldai.cpp
  53 properties.h
  54 properties.cpp
  55 factor.h
  56
  57 FILES IN SVN HEAD THAT ARE STILL RELEVANT:
  58 ChangeLog
  59 README
  60 TODO
  61 prob.h
  62 factorgraph.h
  63 factorgraph.cpp
  64 regiongraph.h
  65 regiongraph.cpp
  66
  67 daialg.h
  68 daialg.cpp
  69 bp.h
  70 bp.cpp
  71 hak.h
  72 hak.cpp
  73 jtree.h
  74 jtree.cpp
  75 lc.h
  76 lc.cpp
  77 mf.h
  78 mf.cpp
  79 mr.h
  80 mr.cpp
  81 treeep.h
  82 treeep.cpp
  83
  84 matlab/*
  85 tests/*
  86 utils/*
  87
  88
  89 DOCUMENTATION READY:
  90 - bipgraph.h, bipgraph.cpp
  91 - var.h