# Copyright (C) 2006-2008 Joris Mooij [joris dot mooij at tuebingen dot mpg dot de] # Radboud University Nijmegen, The Netherlands / # Max Planck Institute for Biological Cybernetics, Germany # # This file is part of libDAI. # # libDAI is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # libDAI is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with libDAI; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # Enable/disable various approximate inference methods WITH_BP=true WITH_MF=true WITH_HAK=true WITH_LC=true WITH_TREEEP=true WITH_JTREE=true WITH_MR=true # Build with debug info? DEBUG=true # Build matlab interface? WITH_MATLAB= # New/old matlab version? NEW_MATLAB=true # Windows or linux (default)? WINDOWS= # Directories INC=include/dai SRC=src LIB=lib # Extensions (library, object, executable extensions) LE=.a OE=.o EE= # Libraries LIBS=-ldai # We use the BOOST Program Options library BOOSTLIBS=-lboost_program_options # Compile using GNU C++ Compiler CC=g++ # Flags for the C++ compiler CCFLAGS=-Wno-deprecated -Wall -W -Wextra -fpic -I./include -Llib -O3 #-pg #-static #-DVERBOSE ifdef DEBUG CCFLAGS:=$(CCFLAGS) -g -DDAI_DEBUG endif ifdef WINDOWS CCFLAGS=$(CCFLAGS) -DWINDOWS endif OBJECTS:=exactinf$(OE) ifdef WITH_BP CCFLAGS:=$(CCFLAGS) -DWITH_BP OBJECTS:=$(OBJECTS) bp$(OE) endif ifdef WITH_MF CCFLAGS:=$(CCFLAGS) -DWITH_MF OBJECTS:=$(OBJECTS) mf$(OE) endif ifdef WITH_HAK CCFLAGS:=$(CCFLAGS) -DWITH_HAK OBJECTS:=$(OBJECTS) hak$(OE) endif ifdef WITH_LC CCFLAGS:=$(CCFLAGS) -DWITH_LC OBJECTS:=$(OBJECTS) lc$(OE) endif ifdef WITH_TREEEP CCFLAGS:=$(CCFLAGS) -DWITH_TREEEP OBJECTS:=$(OBJECTS) treeep$(OE) endif ifdef WITH_JTREE CCFLAGS:=$(CCFLAGS) -DWITH_JTREE OBJECTS:=$(OBJECTS) jtree$(OE) endif ifdef WITH_MR CCFLAGS:=$(CCFLAGS) -DWITH_MR OBJECTS:=$(OBJECTS) mr$(OE) endif ifdef WITH_MATLAB # Replace the following by the directory where Matlab has been installed MATLABDIR=/opt/matlab/bin # Replace the following with the extension of compiled MEX files on this platform, e.g. .mexglx for x86 ME=.mexglx MEX=$(MATLABDIR)/mex MEXFLAGS=-I. ifdef DEBUG MEXFLAGS:=$(MEXFLAGS) -g -DDAI_DEBUG endif ifdef NEW_MATLAB MEXFLAGS:=$(MEXFLAGS) -largeArrayDims else MEXFLAGS:=$(MEXFLAGS) -DSMALLMEM endif endif HEADERS=$(INC)/bipgraph.h $(INC)/diffs.h $(INC)/index.h $(INC)/var.h $(INC)/factor.h $(INC)/varset.h $(INC)/prob.h $(INC)/daialg.h $(INC)/properties.h $(INC)/alldai.h $(INC)/enum.h $(INC)/exceptions.h TARGETS=tests utils $(LIB)/libdai$(LE) example$(EE) testregression doc ifdef WITH_MATLAB TARGETS:=$(TARGETS) matlabs endif all : $(TARGETS) echo -e "\a" matlabs : matlab/dai.$(ME) matlab/dai_readfg.$(ME) matlab/dai_writefg.$(ME) matlab/dai_potstrength.$(ME) $(LIB)/libdai$(LE) : bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) varset$(OE) $(OBJECTS) ar rcus $(LIB)/libdai$(LE) bipgraph$(OE) daialg$(OE) alldai$(OE) clustergraph$(OE) factorgraph$(OE) properties$(OE) regiongraph$(OE) util$(OE) weightedgraph$(OE) exceptions$(OE) varset$(OE) $(OBJECTS) tests : tests/test$(EE) utils : utils/createfg$(EE) utils/fg2dot$(EE) utils/fginfo$(EE) testregression : tests/test echo Testing...this can take a while... cd tests; time ./testregression; cd .. doc : $(INC)/*.h $(SRC)/*.cpp doxygen.conf doxygen doxygen.conf clean : rm *$(OE) example$(EE) matlab/*.$(ME) matlab/*$(OE) tests/test$(EE) utils/fg2dot$(EE) utils/createfg$(EE) utils/fginfo$(EE) $(LIB)/libdai$(LE); echo rm -R doc; echo bipgraph$(OE) : $(SRC)/bipgraph.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/bipgraph.cpp daialg$(OE) : $(SRC)/daialg.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/daialg.cpp exactinf$(OE) : $(SRC)/exactinf.cpp $(INC)/exactinf.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/exactinf.cpp bp$(OE) : $(SRC)/bp.cpp $(INC)/bp.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/bp.cpp lc$(OE) : $(SRC)/lc.cpp $(INC)/lc.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/lc.cpp mf$(OE) : $(SRC)/mf.cpp $(INC)/mf.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/mf.cpp factorgraph$(OE) : $(SRC)/factorgraph.cpp $(INC)/factorgraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/factorgraph.cpp util$(OE) : $(SRC)/util.cpp $(INC)/util.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/util.cpp regiongraph$(OE) : $(SRC)/regiongraph.cpp $(INC)/regiongraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/regiongraph.cpp hak$(OE) : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h $(CC) $(CCFLAGS) -c $(SRC)/hak.cpp clustergraph$(OE) : $(SRC)/clustergraph.cpp $(INC)/clustergraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/clustergraph.cpp jtree$(OE) : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(CC) $(CCFLAGS) -c $(SRC)/jtree.cpp treeep$(OE) : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h $(CC) $(CCFLAGS) -c $(SRC)/treeep.cpp weightedgraph$(OE) : $(SRC)/weightedgraph.cpp $(INC)/weightedgraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/weightedgraph.cpp mr$(OE) : $(SRC)/mr.cpp $(INC)/mr.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/mr.cpp properties$(OE) : $(SRC)/properties.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/properties.cpp exceptions$(OE) : $(SRC)/exceptions.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/exceptions.cpp alldai$(OE) : $(SRC)/alldai.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/alldai.cpp varset$(OE) : $(SRC)/varset.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/varset.cpp # EXAMPLE ########## example$(EE) : example.cpp $(HEADERS) $(LIB)/libdai$(LE) $(CC) $(CCFLAGS) -o example$(EE) example.cpp $(LIBS) # TESTS ######## tests/test$(EE) : tests/test.cpp $(HEADERS) $(LIB)/libdai$(LE) $(CC) $(CCFLAGS) -o tests/test$(EE) tests/test.cpp $(LIBS) $(BOOSTLIBS) # MATLAB INTERFACE ################### matlab/dai.$(ME) : matlab/dai.cpp $(HEADERS) matlab/matlab$(OE) $(LIB)/libdai$(LE) $(MEX) $(MEXFLAGS) -o matlab/dai matlab/dai.cpp matlab/matlab$(OE) $(LIB)/libdai$(LE) matlab/dai_readfg.$(ME) : matlab/dai_readfg.cpp $(HEADERS) factorgraph$(OE) matlab/matlab$(OE) exceptions$(OE) varset$(OE) $(MEX) $(MEXFLAGS) -o matlab/dai_readfg matlab/dai_readfg.cpp factorgraph$(OE) matlab/matlab$(OE) exceptions$(OE) varset$(OE) matlab/dai_writefg.$(ME) : matlab/dai_writefg.cpp $(HEADERS) factorgraph$(OE) matlab/matlab$(OE) exceptions$(OE) varset$(OE) $(MEX) $(MEXFLAGS) -o matlab/dai_writefg matlab/dai_writefg.cpp factorgraph$(OE) matlab/matlab$(OE) exceptions$(OE) varset$(OE) matlab/dai_potstrength.$(ME) : matlab/dai_potstrength.cpp $(HEADERS) matlab/matlab$(OE) exceptions$(OE) varset$(OE) $(MEX) $(MEXFLAGS) -o matlab/dai_potstrength matlab/dai_potstrength.cpp matlab/matlab$(OE) exceptions$(OE) varset$(OE) matlab/matlab$(OE) : matlab/matlab.cpp matlab/matlab.h $(HEADERS) $(MEX) $(MEXFLAGS) -outdir matlab -c matlab/matlab.cpp # UTILS ######## utils/createfg$(EE) : utils/createfg.cpp $(HEADERS) $(LIB)/libdai$(LE) $(CC) $(CCFLAGS) -o utils/createfg utils/createfg.cpp $(LIBS) $(BOOSTLIBS) utils/fg2dot$(EE) : utils/fg2dot.cpp $(HEADERS) $(LIB)/libdai$(LE) $(CC) $(CCFLAGS) -o utils/fg2dot utils/fg2dot.cpp $(LIBS) utils/fginfo$(EE) : utils/fginfo.cpp $(HEADERS) $(LIB)/libdai$(LE) $(CC) $(CCFLAGS) -o utils/fginfo utils/fginfo.cpp $(LIBS)