# Copyright (C) 2006-2008 Joris Mooij [j dot mooij at science dot ru dot nl] # Radboud University Nijmegen, The Netherlands # # This file is part of libDAI. # # libDAI is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # libDAI is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with libDAI; if not, write to the Free Software # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA # Enable/disable various approximate inference methods WITH_BP = true WITH_MF = true WITH_HAK = true WITH_LC = true WITH_TREEEP = true WITH_JTREE = true WITH_MR = true # Build with debug info? DEBUG = true # Build matlab interface? WITH_MATLAB = # New/old matlab version? NEW_MATLAB = true # Windows or linux (default)? WINDOWS = # Directories INC = include/dai SRC = src LIB = lib # We use the BOOST Program Options library BOOSTFLAGS = -lboost_program_options # Compile using GNU C++ Compiler CC = g++ # Flags for the C++ compiler CCFLAGS = -Wall -W -Wextra -fpic -I./include -Llib -O3 #-pg #-static #-DVERBOSE ifdef DEBUG CCFLAGS := $(CCFLAGS) -g -DDAI_DEBUG else CCFLAGS := $(CCFLAGS) endif ifdef WITH_BP CCFLAGS := $(CCFLAGS) -DWITH_BP OBJECTS := $(OBJECTS) bp.o endif ifdef WITH_MF CCFLAGS := $(CCFLAGS) -DWITH_MF OBJECTS := $(OBJECTS) mf.o endif ifdef WITH_HAK CCFLAGS := $(CCFLAGS) -DWITH_HAK OBJECTS := $(OBJECTS) hak.o endif ifdef WITH_LC CCFLAGS := $(CCFLAGS) -DWITH_LC OBJECTS := $(OBJECTS) lc.o endif ifdef WITH_TREEEP CCFLAGS := $(CCFLAGS) -DWITH_TREEEP OBJECTS := $(OBJECTS) treeep.o endif ifdef WITH_JTREE CCFLAGS := $(CCFLAGS) -DWITH_JTREE OBJECTS := $(OBJECTS) jtree.o endif ifdef WITH_MR CCFLAGS := $(CCFLAGS) -DWITH_MR OBJECTS := $(OBJECTS) mr.o endif ifdef WITH_MATLAB # Replace the following by the directory where Matlab has been installed MATLABDIR = /opt/matlab/bin # Replace the following with the extension of compiled MEX files on this platform, e.g. .mexglx for x86 MEXEXT = .mexglx MEX = $(MATLABDIR)/mex MEXFLAGS = -I. ifdef DEBUG MEXFLAGS := $(MEXFLAGS) -g -DDAI_DEBUG endif ifdef NEW_MATLAB MEXFLAGS := $(MEXFLAGS) -largeArrayDims else MEXFLAGS := $(MEXFLAGS) -DSMALLMEM endif endif HEADERS = $(INC)/bipgraph.h $(INC)/diffs.h $(INC)/index.h $(INC)/var.h $(INC)/factor.h $(INC)/varset.h $(INC)/prob.h $(INC)/daialg.h $(INC)/properties.h $(INC)/alldai.h $(INC)/enum.h $(INC)/x2x.h $(INC)/exceptions.h TARGETS = tests utils $(LIB)/libdai.a example testregression doc ifdef WITH_MATLAB TARGETS := $(TARGETS) matlabs endif all : $(TARGETS) echo -e "\a" matlabs : matlab/dai.$(MEXEXT) matlab/dai_readfg.$(MEXEXT) matlab/dai_writefg.$(MEXEXT) matlab/dai_potstrength.$(MEXEXT) $(LIB)/libdai.a : bipgraph.o daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o exceptions.o $(OBJECTS) ar rcs $(LIB)/libdai.a bipgraph.o daialg.o alldai.o clustergraph.o factorgraph.o properties.o regiongraph.o util.o weightedgraph.o x2x.o exceptions.o $(OBJECTS) tests : tests/test utils : utils/createfg utils/fg2dot utils/fginfo testregression : tests/test echo Testing...this can take a while... cd tests; time ./testregression; cd .. doc : $(INC)/*.h $(SRC)/*.cpp doxygen.conf doxygen doxygen.conf clean : rm *.o example matlab/*.$(MEXEXT) matlab/*.o tests/test utils/fg2dot utils/createfg utils/fginfo $(LIB)/libdai.a; echo rm -R doc; echo bipgraph.o : $(SRC)/bipgraph.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/bipgraph.cpp daialg.o : $(SRC)/daialg.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/daialg.cpp bp.o : $(SRC)/bp.cpp $(INC)/bp.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/bp.cpp lc.o : $(SRC)/lc.cpp $(INC)/lc.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/lc.cpp mf.o : $(SRC)/mf.cpp $(INC)/mf.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/mf.cpp factorgraph.o : $(SRC)/factorgraph.cpp $(INC)/factorgraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/factorgraph.cpp util.o : $(SRC)/util.cpp $(INC)/util.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/util.cpp regiongraph.o : $(SRC)/regiongraph.cpp $(INC)/regiongraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/regiongraph.cpp hak.o : $(SRC)/hak.cpp $(INC)/hak.h $(HEADERS) $(INC)/regiongraph.h $(CC) $(CCFLAGS) -c $(SRC)/hak.cpp clustergraph.o : $(SRC)/clustergraph.cpp $(INC)/clustergraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/clustergraph.cpp jtree.o : $(SRC)/jtree.cpp $(INC)/jtree.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(CC) $(CCFLAGS) -c $(SRC)/jtree.cpp treeep.o : $(SRC)/treeep.cpp $(INC)/treeep.h $(HEADERS) $(INC)/weightedgraph.h $(INC)/clustergraph.h $(INC)/regiongraph.h $(INC)/jtree.h $(CC) $(CCFLAGS) -c $(SRC)/treeep.cpp weightedgraph.o : $(SRC)/weightedgraph.cpp $(INC)/weightedgraph.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/weightedgraph.cpp mr.o : $(SRC)/mr.cpp $(INC)/mr.h $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/mr.cpp properties.o : $(SRC)/properties.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/properties.cpp exceptions.o: $(SRC)/exceptions.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/exceptions.cpp alldai.o : $(SRC)/alldai.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/alldai.cpp x2x.o : $(SRC)/x2x.cpp $(HEADERS) $(CC) $(CCFLAGS) -c $(SRC)/x2x.cpp # EXAMPLE ########## example : example.cpp $(HEADERS) $(LIB)/libdai.a $(CC) $(CCFLAGS) -o example example.cpp -ldai # TESTS ######## tests/test : tests/test.cpp $(HEADERS) $(LIB)/libdai.a $(CC) $(CCFLAGS) -o tests/test tests/test.cpp -ldai $(BOOSTFLAGS) # MATLAB INTERFACE ################### matlab/dai.$(MEXEXT) : matlab/dai.cpp $(HEADERS) matlab/matlab.o $(LIB)/libdai.a $(MEX) $(MEXFLAGS) -o matlab/dai matlab/dai.cpp matlab/matlab.o $(LIB)/libdai.a matlab/dai_readfg.$(MEXEXT) : matlab/dai_readfg.cpp $(HEADERS) factorgraph.o matlab/matlab.o $(MEX) $(MEXFLAGS) -o matlab/dai_readfg matlab/dai_readfg.cpp factorgraph.o matlab/matlab.o matlab/dai_writefg.$(MEXEXT) : matlab/dai_writefg.cpp $(HEADERS) factorgraph.o matlab/matlab.o $(MEX) $(MEXFLAGS) -o matlab/dai_writefg matlab/dai_writefg.cpp factorgraph.o matlab/matlab.o matlab/dai_potstrength.$(MEXEXT) : matlab/dai_potstrength.cpp $(HEADERS) matlab/matlab.o $(MEX) $(MEXFLAGS) -o matlab/dai_potstrength matlab/dai_potstrength.cpp matlab/matlab.o matlab/matlab.o : matlab/matlab.cpp matlab/matlab.h $(HEADERS) $(MEX) $(MEXFLAGS) -outdir matlab -c matlab/matlab.cpp # UTILS ######## utils/createfg : utils/createfg.cpp $(HEADERS) factorgraph.o weightedgraph.o util.o bipgraph.o exceptions.o $(CC) $(CCFLAGS) -o utils/createfg utils/createfg.cpp factorgraph.o weightedgraph.o util.o bipgraph.o exceptions.o $(BOOSTFLAGS) utils/fg2dot : utils/fg2dot.cpp $(HEADERS) factorgraph.o exceptions.o $(CC) $(CCFLAGS) -o utils/fg2dot utils/fg2dot.cpp factorgraph.o exceptions.o utils/fginfo : utils/fginfo.cpp $(HEADERS) factorgraph.o bipgraph.o exceptions.o $(CC) $(CCFLAGS) -o utils/fginfo utils/fginfo.cpp factorgraph.o bipgraph.o exceptions.o