The following functions are obsolete and will be removed in the next major release (0.3.0):

TFactor<T>& TFactor<T>::makeZero( T epsilon );
TFactor<T>& TFactor<T>::makePositive( T epsilon );
TProb<T>& TProb<T>::makePositive( T epsilon );
TProb<T>& TProb<T>::makeZero( T epsilon );
virtual void InfAlg::clamp( const Var &v, size_t x, bool backup = false ) = 0;
void DAIAlg<GRM>::clamp( const Var &v, size_t x, bool backup = false );
virtual void FactorGraph::clamp( const Var &v, size_t x, bool backup = false );
FactorGraph clamped( const Var &v, size_t x ) const;
size_t FactorGraph::VV2E(size_t n1, size_t n2) const;
const Edge& FactorGraph::edge(size_t e) const;
void FactorGraph::indexEdges();
size_t FactorGraph::nr_edges() const;
const std::vector<Edge>& FactorGraph::edges() const;
bool BipartiteGraph::_edge_indexed;
std::vector<Edge> BipartiteGraph::_edges;
hash_map<Edge,size_t> BipartiteGraph::_vv2e;
void BipartiteGraph::indexEdges();
const Edge& BipartiteGraph::edge(size_t e) const;
const std::vector<Edge>& BipartiteGraph::edges() const;
size_t BipartiteGraph::VV2E(size_t n1, size_t n2) const;
size_t BipartiteGraph::nr_edges() const;
size_t Permute::convert_linear_index( size_t li ) const;
TProb<T> TProb<T>::sgn() const;
bool RegionGraph::Check_Counting_Numbers();
void RegionGraph::Calc_Counting_Numbers();
std::vector<Factor> calcPairBeliefsNew( const InfAlg& obj, const VarSet& vs, bool reInit );
Factor calcMarginal2ndO( const InfAlg& obj, const VarSet& vs, bool reInit );
class Diffs;
std::pair<size_t,size_t> Treewidth( const FactorGraph & fg );
typedef UEdgeVec;
typedef DEdgeVec;
DEdgeVec GrowRootedTree( const Graph &T, size_t Root );
const Factor& LC::belief(size_t);