Release: libDAI version 0.3.0

diff --git a/AUTHORS b/AUTHORS
index 27da866..a3bb075 100644 (file)
--- a/AUTHORS
+++ b/AUTHORS
@@ -10,7 +10,8 @@ Patrick Pletscher (contributed the SWIG interface).
 Smaller contributions (bug fixes and miscellaneous smaller patches) have been made by:
 Claudio Lima, Christian Wojek, Sebastian Nowozin, Stefano Pellegrini, Ofer Meshi,
 Dan Preston, Peter Gober, Jiuxiang Hu, Peter Rockett, Dhruv Batra, Alexander Schwing, 
-Alejandro Lage, Matt Dunham.
+Alejandro Lage, Matt Dunham, Laurens van der Maaten, Jerome Maye, Prija, Hynek Urban,
+Avneesh Saluja, Thomas Mensink.
 
 Part of this work was part of the Interactive Collaborative Information Systems (ICIS) 
 project, supported by the Dutch Ministry of Economic Affairs, grant BSIK03024. The

diff --git a/ChangeLog b/ChangeLog
index 9a5cc93..bee5af7 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,14 +1,22 @@
-* [Laurens van der Maaten] src/matlab/dai.cpp now correctly handles missing logZ() and maxDiff() implementations
-* Improved dai::Exception object (it now stores more information and doesn't print to stderr by default)
+libDAI-0.3.0 (2011-07-12)
+-------------------------
+
+New license:
+* Changed license from GPL v2+ to FreeBSD (BSD 2-clause)
+
+Miscellaneous improvements:
+* Improved Exception class 
+  (it now stores more information and doesn't print to stderr by default)
 * Added builtinInfAlgs() and builtinInfAlgNames()
+
+Bug fixes:
+* [Laurens van der Maaten] src/matlab/dai.cpp now correctly handles missing logZ() 
+  and maxDiff() implementations
 * Now uses GMP big integer type to represent linear states and the number of
-  states of VarSets (in some cases). This fixes a bug Jerome Maye found in the 
-  State() class in index.h. Unfortunately, the supplied Makefile.WINDOWS now
+  states of VarSets (in some cases). This fixes a bug Jerome Maye and Prija 
+  found in the State class. Unfortunately, the supplied Makefile.WINDOWS now 
   no longer works out-of-the-box.
-* Changed license from GPL v2+ to FreeBSD (BSD 2-clause)
 * Fixed numerical issues in MF, FBP and TRWBP (discovered in sparse branch)
-* Jerome Maye and Prija independently found a bug in the State() class in index.h; 
-  implemented a workaround for the moment
 * Fixed bug in findMaximum(): inconsistent max-beliefs are now detected,
   instead of returning a MAP state with zero joint probability
   (reported by Hynek Urban)

diff --git a/Makefile b/Makefile
index 5ee5604..5352fce 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -12,8 +12,8 @@ include Makefile.ALL
 include Makefile.conf
 
 # Set version and date
-DAI_VERSION="git HEAD"
-DAI_DATE="July 7, 2011"
+DAI_VERSION="0.3.0"
+DAI_DATE="July 12, 2011"
 
 # Directories of libDAI sources
 # Location of libDAI headers

diff --git a/README b/README
index 965742c..817a953 100644 (file)
--- a/README
+++ b/README
@@ -2,8 +2,8 @@ libDAI  -  A free/open source C++ library for Discrete Approximate Inference
 
 -------------------------------------------------------------------------------
 
-Version:  git HEAD
-Date:     July 7, 2011
+Version:  0.3.0
+Date:     July 12, 2011
 See also: http://www.libdai.org
 
 -------------------------------------------------------------------------------
@@ -26,8 +26,7 @@ If you write a scientific paper describing research that made substantive use
 of this library, please cite the following paper describing libDAI:
 
 Joris M. Mooij;
-libDAI: A free & open source C++ library for Discrete Approximate Inference in
-graphical models;
+libDAI: A free & open source C++ library for Discrete Approximate Inference in graphical models;
 Journal of Machine Learning Research, 11(Aug):2169-2173, 2010.
 
 In BiBTeX format (for your convenience):
@@ -134,7 +133,7 @@ provides a command line interface and experimental python and octave interfaces
 Compatibility
 
 The code has been developed under Debian GNU/Linux with the GCC compiler suite.
-libDAI compiles successfully with g++ versions 3.4 up to 4.4.
+libDAI compiles successfully with g++ versions 3.4 up to 4.6.
 
 libDAI has also been successfully compiled with MS Visual Studio 2008 under
 Windows (but not all build targets are supported yet) and with Cygwin under
@@ -164,6 +163,7 @@ You need:
   * GNU make
   * recent boost C++ libraries (at least version 1.37; however, version 1.37
     shipped with Ubuntu 9.04 is known not to work)
+  * GMP library (or the Windows port called MPIR)
   * doxygen (only for building the documentation)
   * graphviz (only for using some of the libDAI command line utilities)
   * CImg library (only for building the image segmentation example)
@@ -171,7 +171,7 @@ You need:
 On Debian/Ubuntu, you can easily install the required packages with a single
 command:
 
-  apt-get install g++ make doxygen graphviz libboost-dev libboost-graph-dev libboost-program-options-dev libboost-test-dev cimg-dev
+  apt-get install g++ make doxygen graphviz libboost-dev libboost-graph-dev libboost-program-options-dev libboost-test-dev libgmp-dev cimg-dev
 
 (root permissions needed).
 
@@ -179,7 +179,7 @@ On Mac OS X (10.4 is known to work), these packages can be installed easily via
 MacPorts. If MacPorts is not already installed, install it according to the
 instructions at http://www.macports.org/. Then, a simple
 
-  sudo port install gmake boost doxygen graphviz
+  sudo port install gmake boost gmp doxygen graphviz
 
 should be enough to install everything that is needed.
 
@@ -233,6 +233,7 @@ You need:
 
   * A recent version of MicroSoft Visual Studio (2008 is known to work)
   * recent boost C++ libraries (version 1.37 or higher)
+  * GMP or MPIR library
   * GNU make (can be obtained from http://gnuwin32.sourceforge.net)
   * CImg library (only for building the image segmentation example)
 
@@ -261,6 +262,12 @@ Because building boost under Windows is tricky, I provide some guidance here.
 
         bjam --with-graph --with-math --with-program_options --with-test link=static runtime-link=shared
 
+Building GMP or MPIR under Windows
+
+Information about how to build GPR or MPIR under Windows can be found on the
+internet. The user has to update Makefile.WINDOWS in order to link with the GPR
+/MPIR libraries.
+
 Building libDAI
 
 To build the source, copy Makefile.WINDOWS to Makefile.conf. Then, edit

diff --git a/include/dai/doc.h b/include/dai/doc.h
index 24a9aab..85aae65 100644 (file)
--- a/include/dai/doc.h
+++ b/include/dai/doc.h
@@ -31,8 +31,8 @@
 
 /** \mainpage Reference manual for libDAI - A free/open source C++ library for Discrete Approximate Inference methods
  *  \author Joris Mooij (with contributions of Frederik Eaton)
- *  \version git HEAD
- *  \date July 7, 2011
+ *  \version 0.3.0
+ *  \date July 12, 2011
  *
  *  <hr size="1">
  *  \section about About libDAI

diff --git a/src/bp.cpp b/src/bp.cpp
index 157c8f8..4c3b951 100644 (file)
--- a/src/bp.cpp
+++ b/src/bp.cpp
@@ -23,6 +23,7 @@ using namespace std;
 
 
 #define DAI_BP_FAST 1
+/// \todo Make DAI_BP_FAST a compile-time choice, as it is a memory/speed tradeoff
 
 
 void BP::setProperties( const PropertySet &opts ) {