ParaParser/ParaParser.h

   1 #ifndef __PARAPARSER_H__
   2 #define __PARAPARSER_H__
   3
   4 #include <Python.h>
   5 #include <map>
   6 using namespace std;
   7
   8 struct KeyCmp {
   9    //bool operator()( unsigned long s1, unsigned long s2 ) const {
  10    bool operator()( int s1, int s2 ) const {
  11           return ( s1 < s2 );
  12    }
  13 };
  14
  15
  16 typedef map<unsigned long,char**,KeyCmp> MAP;
  17
  18 class ParaParser{
  19
  20    private:
  21       char* format_string;
  22       char** field_names;
  23       size_t num_columns;
  24       char** types_list;
  25
  26       MAP *entries;
  27
  28    public:
  29       ParaParser(const char* fmt, char** _fields, int num_entries);
  30       int parseFile(char* reads_filename);
  31       void create_entry_from_line(const char* current_line, char* format_string);
  32       PyObject* fetchEntry(int id);
  33
  34       ~ParaParser(){}
  35 };
  36
  37 #endif // __PARAPARSER_H__
  38