+ changed check for intial setting of old_w. (matrix != None does not work in cvxopt)
[qpalma.git] / README
1 Installation instructions for QPalma Version 0.9
2
3 The package requires version 2.5 or newer of Python, and is built from
4 source, so the header files and libraries for Python must be installed,
5 as well as the core binaries.
6
7
8 Installation Instructions
9 -------------------------
10
11 You need the following packages
12
13 - SWIG ( >=1.3.31 )
14 - numpy ( >=1.0.4 )
15
16 - Pythongrid
17 - Genefinding
18
19 You can obtain SWIG from http://www.swig.org and numpy from http://numpy.scipy.org/
20 or ask your sysadmin to install the packages.
21
22 Pythongrid and Genefinding are two utility packages from our lab. These can be obtained via:
23
24 http://www.fml.tuebingen.mpg.de/raetsch/projects/qpalma
25
26 Once you have the above packages installed you can start installing QPalma.
27
28 Assuming you downloaded QPalma-0.9.tar.gz type:
29
30 tar -xzvf QPalma-0.9.tar.gz
31
32 cd QPalma-0.9
33
34 python setup.py build
35
36 to build the necessary C++ extension modules and the python code.
37
38
39 Setting environment variables
40 -----------------------------
41
42 You will need the following variables set:
43
44 - SGE_ROOT should point to
45 -
46
47
48 Further information
49 -------------------
50
51 More extensive documentation can be found under the doc/ directory of the
52 QPalma distribution.
53
54
55
56 Contact
57 -------
58
59 qpalma@tuebingen.mpg.de