python/TrainingParam.py

   1 #!/usr/bin/env python
   2 # -*- coding: utf-8 -*-
   3
   4 class Param:
   5
   6    def __init__(self):
   7       """ default parameters """
   8
   9       #self.basedir = '/fml/ag-raetsch/share/projects/qpalma/elegans_palma'
  10       self.basedir = '/fml/ag-raetsch/share/projects/qpalma/zebrafish'
  11       self.MAX_MEM = 31000;
  12       self.LOCAL_ALIGN = 1;
  13       self.init_param = 1;
  14       self.train_with_splicesitescoreinformation = 1;
  15       self.train_with_intronlengthinformation = 1;
  16       self.C = 0.001;
  17       self.microexon = 0;
  18       self.prob = 0;
  19       self.organism = 'zebrafish'
  20       self.expt = 'training'
  21
  22       self.insertion_prob  = self.prob/3 ;
  23       self.deletion_prob   = self.prob/3 ;
  24       self.mutation_prob   = self.prob/3 ;