git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8646 e1793c9e...
[qpalma.git] / scripts / createNewDataset.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 import qpalma.Configuration as Conf
5 from compile_dataset import compile_d
6
7
8 #filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allFilteredReads_20_03_2008'
9
10 filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allReads.pipeline.perm'
11 remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_05_04_2008_tmp'
12
13 compile_d(Conf.gff_fn,Conf.dna_flat_fn,filtered_fn,remapped_fn,Conf.tmp_dir,'dataset_remapped_test_new',True)