+ fixed some bugs in the negative strand lookup table
[qpalma.git] / scripts / run_heuristic
1 #!/bin/bash
2
3 run_dir=/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+
4 data_dir=/fml/ag-raetsch/share/projects/qpalma/solexa/new_run
5
6 python PipelineHeuristic.py $data_dir/map.vm $data_dir/allReads.pipeline $run_dir/param_526.pickle $run_dir/run_obj.pickle $data_dir/spliced.heuristic $data_dir/unspliced.heuristic