tools/data_tools/PyGff.py

   1 #!/usr/bin/env python
   2 # -*- coding: utf-8 -*-
   3
   4 class Gene:
   5
   6    def __init__(self,chr,begin,end,strand):
   7       assert chr != ''
   8       assert begin >= 0 and begin <= end and end >= 0
   9       assert strand in ['+','-']
  10
  11       self.chromosome = chr
  12       self.start = begin
  13       self.stop = end
  14       self.strand = strand
  15       self.exons = []
  16       self.fiveUTR = []
  17       self.threeUTR = []
  18
  19    def addExon(self,start,stop):
  20       self.exons.append((start,stop))
  21
  22    def load(self,filename):
  23       pass
  24
  25    def save(self,filename):
  26       pass