+ found bug which caused ~10 reads of overlap "0"
[qpalma.git] / tools / data_tools / Solexa.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 class Read:
5
6 chromosome = ''
7 position = 0
8 sequence = ''
9 strand = ''
10
11 # mismatch = 0
12 # repeats = 0
13 # length = 0
14 # deletion = 0
15
16 prob = None
17 calibratedProb = None
18 chastity = None
19
20 def __init__(self,chr,pos,seq,strand,prob,calibrated,chastity):
21 self.chromosome = chr
22 self.position = pos
23 self.sequence = seq
24 self.strand = strand
25 self.prob = prob
26 self.calibratedProb = calibrated
27 self.chastity = chastity