tools/data_tools/datastructures.h

   1 #ifndef __DATA_STRUCTURES_H__
   2 #define __DATA_STRUCTURES_H__
   3
   4 struct gene {
   5    int start;
   6    int stop;
   7    int* exon_starts;
   8    int* exon_stops;
   9    int num_exons;
  10    int max_exons;
  11    char strand;
  12 };
  13
  14 struct read {
  15    int start;
  16    int stop;
  17    char* seq;
  18    char strand;
  19
  20    int* prb;
  21    int* cprb;
  22    int* chastity;
  23 };
  24
  25 struct gene* gene_alloc(void);
  26 void free_gene(struct gene* oldGene);
  27 void add_exon(struct gene* currentGene,int start, int stop);
  28
  29 #endif // __DATA_STRUCTURES_H__