+ extended dataset compilation function
[qpalma.git] / tools / data_tools / filterReads.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 import sys
5 import pdb
6
7 import qpalma
8 from qpalma.tools.parseGff import parse_gff
9
10 def filter(gff_file,reads,out):
11 allGenes = parse_gff(gff_file)
12
13 out_fh = open(out,'w+')
14
15
16 out_fh.close()
17
18 if __name__ == '__main__':
19 assert len(sys.argv) == 4, 'Usage: '
20 (gff_file,reads,out) = sys.argv[1:4]
21 filter(gff_file,reads,out)
22