+ added small counting script
[qpalma.git] / tools / mappingInfo.sh
1 #!/bin/bash
2
3 dir=$1
4
5 num=`cut -f1 $dir/main/reads_0.fl | sort -u | wc -l`
6 echo "Started 1st vmatch run with $num reads."
7
8 num=`cut -f1 $dir/main/map.vm | sort -u | wc -l`
9 echo "Found $num reads in 1st vmatch run."
10
11 num=`cut -f1 $dir/spliced/reads_0.fl | sort -u | wc -l`
12 echo "Started 2nd vmatch run with $num reads."
13
14 num=`cut -f1 $dir/spliced/map.vm | sort -u | wc -l`
15 echo "Found $num reads in 2nd vmatch run"