+ saving changes in the dataset generation
[qpalma.git] / tools / qpalma_dataset_generation / createNewDataset.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 import qpalma.Configuration as Conf
5 from compile_dataset import DatasetGenerator
6
7 filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/new_run/allReads.full'
8
9 map_1_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/new_run/spliced.heuristic'
10 map_2_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/new_run/map_2nd.vm'
11
12 dg = DatasetGenerator(filtered_fn,map_1_fn,map_2_fn)
13 #dg.compile_training_set()
14 dg.compile_testing_set()
15 dg.saveAs('dataset_19_05_08')