+ optimized dataset generation/storage
[qpalma.git] / tools / run_specific_scripts / transcriptome_analysis / createNewDataset.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 import os.path
5
6 import qpalma.Configuration as Conf
7 from compile_dataset import DatasetGenerator
8
9 jp = os.path.join
10
11 working_dir='/fml/ag-raetsch/home/fabio/tmp/transcriptome_data'
12 result_dir='/fml/ag-raetsch/home/fabio/tmp/sandbox'
13
14 map_1_fn = jp(working_dir,'map.vm.spliced')
15 map_2_fn = jp(working_dir,'map_2nd.vm')
16
17 dg = DatasetGenerator(map_1_fn,map_2_fn)
18 dg.compile_dataset()
19 dg.saveAs(jp(result_dir,'dataset_transcriptome_run_1'))