+ added small program for intron-position comparison
[qpalma.git] / tools / run_specific_scripts / transcriptome_analysis / createNewDataset.py
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3
4 import os.path
5
6 import qpalma.Configuration as Conf
7 from compile_dataset import DatasetGenerator
8
9 jp = os.path.join
10
11 #working_dir='/fml/ag-raetsch/home/fabio/tmp/transcriptome_data'
12 #working_dir='/fml/ag-raetsch/home/fabio/tmp/transcriptome_data'
13
14 working_dir='/fml/ag-raetsch/share/projects/qpalma/solexa/new_run2/mapping/spliced'
15
16
17 result_dir='/fml/ag-raetsch/home/fabio/tmp/sandbox'
18
19 #map_1_fn = jp(working_dir,'map.vm.spliced')
20 map_1_fn = jp(working_dir,'spliced.heuristic')
21 map_2_fn = jp(working_dir,'map.vm')
22
23 dg = DatasetGenerator(map_1_fn,map_2_fn)
24 dg.compile_dataset()
25 dg.saveAs(jp(result_dir,'dataset_neg_strand_testcase'))