+ changed python and c code in order to perform easier parameter handling and
[qpalma.git] / dyn_prog / qpalma_dp.h
index 0253cd0..07c5f37 100644 (file)
@@ -133,14 +133,14 @@ class Alignment {
 
       int getResultLength() { return result_len; }
 
-      void getAlignmentResultsOld(int* s_align, int* e_align,
+      void getAlignmentResults(int* s_align, int* e_align,
       int* mmatrix_p, double* alignscores, double* qScores);
     
-      void getAlignmentArraysOld(int* dna_align, int* est_align);
+      void getAlignmentArrays(int* dna_align, int* est_align);
 
 
-      PyObject* getAlignmentResults();
-      PyObject* getAlignmentArrays();
+      PyObject* getAlignmentResultsNew();
+      PyObject* getAlignmentArraysNew();
 };
 
 #endif  // _QPALMA_DP_H_