+ added settings parser module
[qpalma.git] / qpalma / gridtools.py
index 63c44f1..0e34ee2 100644 (file)
@@ -109,14 +109,16 @@ class ApproximationTask(ClusterTask):
 
    def CreateJobs(self):
       """
+      Create...
       """
+
       num_splits = self.global_settings['num_splits']
 
-      run_dir  = '/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+'
-      param_fname    = jp(run_dir,'param_526.pickle')
-      param_fname = self.global_settings['prediction_parameter_fn']
-      run_fname      = jp(run_dir,'run_obj.pickle')
-      run_fname = self.global_settings['run_fn']
+      #run_dir  = '/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+'
+      #param_fname    = jp(run_dir,'param_526.pickle')
+      param_fname = self.global_settings['prediction_parameter_fn']
+      #run_fname      = jp(run_dir,'run_obj.pickle')
+      run_fname = self.global_settings['run_fn']
 
       #result_dir = '/fml/ag-raetsch/home/fabio/tmp/vmatch_evaluation/main'
       result_dir = self.global_settings['approximation_dir']