git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8634 e1793c9e...
[qpalma.git] / scripts / createNewDataset.py
index 917b107..85a2529 100644 (file)
@@ -6,9 +6,8 @@ from compile_dataset import compile_d
 
 
 #filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allFilteredReads_20_03_2008'
-#remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_05_04_2008_tmp'
 
-filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/unfilteredReads_10_04'
-remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_unspliced'
+filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allReads.pipeline.perm'
+remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_05_04_2008_tmp'
 
-compile_d(Conf.gff_fn,Conf.dna_flat_fn,filtered_fn,remapped_fn,Conf.tmp_dir,'dataset_remapped_unspliced',True)
+compile_d(Conf.gff_fn,Conf.dna_flat_fn,filtered_fn,remapped_fn,Conf.tmp_dir,'dataset_remapped_test_new',True)