git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8634 e1793c9e...
[qpalma.git] / scripts / createNewDataset.py
index 9782997..85a2529 100644 (file)
@@ -4,18 +4,10 @@
 import qpalma.Configuration as Conf
 from compile_dataset import compile_d
 
-#filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/filteredReads_11_02_2008_subset'
-#remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/halleluja.txt_1000'
 
-#filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/filteredReads_11_02_2008'
-#filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/filteredReads_18_03_2008'
-#remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_18_03_2008'
-
-filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allFilteredReads_20_03_2008'
+#filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allFilteredReads_20_03_2008'
 
+filtered_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/allReads.pipeline.perm'
 remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_05_04_2008_tmp'
 
-#remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/map.vm_1k'
-#remapped_fn = '/fml/ag-raetsch/share/projects/qpalma/solexa/halleluja.txt'
-
-compile_d(Conf.gff_fn,Conf.dna_flat_fn,filtered_fn,remapped_fn,Conf.tmp_dir,'dataset_remapped',True)
+compile_d(Conf.gff_fn,Conf.dna_flat_fn,filtered_fn,remapped_fn,Conf.tmp_dir,'dataset_remapped_test_new',True)