+ added alignment reconstruction function
[qpalma.git] / scripts / grid_alignment.py
index c2b8cff..0959c5d 100644 (file)
@@ -24,7 +24,9 @@ def g_alignment(chunk_fn,result_fn):
 def create_and_submit():
    jp = os.path.join
 
-   run_dir  = '/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+'
+   #run_dir  = '/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+'
+   run_dir  = '/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/saved_run'
+   
    data_dir = '/fml/ag-raetsch/home/fabio/tmp/transcriptome_data'
 
    chunks_fn = []
@@ -32,6 +34,20 @@ def create_and_submit():
       if fn.startswith('chunk'):
          chunks_fn.append(fn)
 
+
+   chunks_fn = [\
+   'chunk_17.predictions.pickle',\
+   'chunk_18.predictions.pickle',\
+   'chunk_19.predictions.pickle',\
+   'chunk_20.predictions.pickle',\
+   'chunk_21.predictions.pickle',\
+   'chunk_23.predictions.pickle',\
+   'chunk_24.predictions.pickle'
+   ]
+
+   print chunks_fn
+
+
    functionJobs=[]
 
    for chunk_fn in chunks_fn: