+ minor changes in the paths
[qpalma.git] / scripts / grid_alignment.py
index 93457e0..68c12c8 100644 (file)
@@ -24,9 +24,9 @@ def g_alignment(chunk_fn,result_fn):
 def create_and_submit():
    jp = os.path.join
 
-   run_dir  = '/fml/ag-raetsch/home/fabio/tmp/vmatch_evaluation/spliced_1/prediction'
-   result_dir = '/fml/ag-raetsch/home/fabio/tmp/vmatch_evaluation/spliced_1/alignment'
-
+   run_dir     = '/fml/ag-raetsch/share/projects/qpalma/thaliana_4_lanes/lane_4/spliced/prediction'
+   result_dir  = '/fml/ag-raetsch/share/projects/qpalma/thaliana_4_lanes/lane_4/spliced/alignment'
+   
    chunks_fn = []
    for fn in os.listdir(run_dir):
       if fn.startswith('chunk'):