+ got rid of some legacy code
[qpalma.git] / scripts / qpalma_pipeline.py
index 20ed7b4..ac7194e 100644 (file)
@@ -111,17 +111,17 @@ class System:
       print '\t\t\tStarting dataset generation...\n'
       print '#'*80
 
-      #generatePredictionDataset(self.settings)
+      generatePredictionDataset(self.settings)
 
       print '#'*80
       print '\t\t\tStarting alignments...\n'
       print '#'*80
 
       # Now that we have a dataset we can perform accurate alignments
-      #align_task = AlignmentTask(self.settings)
-      #align_task.CreateJobs()
-      #align_task.Submit()
-      #align_task.CheckIfTaskFinished()
+      align_task = AlignmentTask(self.settings)
+      align_task.CreateJobs()
+      align_task.Submit()
+      align_task.CheckIfTaskFinished()
 
       print '#'*80
       print '\t\t\tPostprocessing...\n'