+ changed output format of alignment file script to be compatible with est2gff
[qpalma.git] / scripts / run_heuristic
index 53e5803..e855835 100755 (executable)
@@ -1,6 +1,6 @@
 #!/bin/bash
 
 run_dir=/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+
-data_dir=/fml/ag-raetsch/share/projects/qpalma/solexa/new_run
+data_dir=/fml/ag-raetsch/home/fabio/tmp/transcriptome_data
 
-python PipelineHeuristic.py $data_dir/map.vm $data_dir/allReads.pipeline $run_dir/param_526.pickle $run_dir/run_obj.pickle $data_dir/spliced.heuristic $data_dir/unspliced.heuristic 
+python PipelineHeuristic.py $data_dir/map.vm $run_dir/param_526.pickle $run_dir/run_obj.pickle $data_dir/spliced.heuristic $data_dir/unspliced.heuristic