git.tuebingen.mpg.de Git - qpalma.git/commit

author	Fabio <fabio@congo.fml.local>
	Mon, 13 Oct 2008 15:39:44 +0000 (17:39 +0200)
committer	Fabio <fabio@congo.fml.local>
	Mon, 13 Oct 2008 15:39:44 +0000 (17:39 +0200)
commit	667c4783dd3b59811ead8b79d5dea73b625bb443
tree	fa4af42ac733f5ebd56f94e773a1ba8a34c9021a	tree \| snapshot
parent	dfeb569e210d17b7acdcccdbdab402587659a0b3	commit \| diff

+ extended documentation
+ fixed index issues in sequence utils
+ added small example script for splice site score creation

40 files changed:

doc/qpalma-manual.tex		diff \| blob \| history
qpalma/DatasetUtils.py		diff \| blob \| history
qpalma/Lookup.py		diff \| blob \| history
qpalma/OutputFormat.py		diff \| blob \| history
test.conf		diff \| blob \| history
tests/test_qpalma.py		diff \| blob \| history
tests/test_qpalma_installation.py		diff \| blob \| history
tests/test_utils.py		diff \| blob \| history
tools/calculateAlignmentQuality.m	[deleted file]	blob \| history
tools/calculateSizes	[deleted file]	blob \| history
tools/data_tools/Makefile	[deleted file]	blob \| history
tools/data_tools/datastructures.c	[deleted file]	blob \| history
tools/data_tools/datastructures.h	[deleted file]	blob \| history
tools/data_tools/debug_tools.c	[deleted file]	blob \| history
tools/data_tools/filterReads.c	[deleted file]	blob \| history
tools/data_tools/filterReads.py	[deleted file]	blob \| history
tools/data_tools/parser.c	[deleted file]	blob \| history
tools/data_tools/read.h	[deleted file]	blob \| history
tools/data_tools/sort_genes.c	[deleted file]	blob \| history
tools/data_tools/tools.c	[deleted file]	blob \| history
tools/dataset_scripts/countNotOnChr1-5_pos.py	[deleted file]	blob \| history
tools/dataset_scripts/dataStatistic.py	[deleted file]	blob \| history
tools/dataset_scripts/mappingInfo.sh	[deleted file]	blob \| history
tools/evaluatePrediction.py	[deleted file]	blob \| history
tools/extractESTs	[deleted file]	blob \| history
tools/plot_param.py	[deleted file]	blob \| history
tools/run_specific_scripts/training_dataset/compile_dataset.py	[deleted file]	blob \| history
tools/run_specific_scripts/training_dataset/createNewDataset.py	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/README	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/combine_spliced_map_parts.sh	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/compare_predictions/Makefile	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/compare_predictions/compare.c	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/compare_predictions/gt_test	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/compare_predictions/pred_test	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/compile_dataset.py	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/createExonInfoForGenefinding.py	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/createFullMap.sh	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/createGenefindingInfo.sh	[deleted file]	blob \| history
tools/run_specific_scripts/transcriptome_analysis/createNewDataset.py	[deleted file]	blob \| history
tools/spliceScoreConverter.py	[new file with mode: 0644]	blob

QPalma the short reads alignment project

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