+ got rid of some legacy code
authorFabio <fabio@congo.fml.local>
Wed, 8 Oct 2008 09:29:54 +0000 (11:29 +0200)
committerFabio <fabio@congo.fml.local>
Wed, 8 Oct 2008 09:29:54 +0000 (11:29 +0200)
commit98acb7950a71d03b1e67eb1189f425434cfeefd5
tree4d449ac45f9ef3f39c539d4ddf3367f6055d8b6f
parent4ac4b9bf11188321f9a53cc4617dfbc0a73baa8f
+ got rid of some legacy code
+ added test code
+ fixed offsets in alignment file calculation
+ added license information to files with missing info
21 files changed:
DynProg/QPalmaDP.i
README
qpalma/Configuration.py [deleted file]
qpalma/DatasetUtils.py
qpalma/Lookup.py
qpalma/OutputFormat.py
qpalma/PipelineHeuristic.py
qpalma/Run.py [deleted file]
qpalma/SIQP.py
qpalma/SIQP_CPX.py
qpalma/SIQP_CVXOPT.py
qpalma/computeSpliceAlignWithQuality.py
qpalma/computeSpliceWeights.py
qpalma/gridtools.py
qpalma/parsers.py [deleted file]
qpalma/sequence_utils.py
scripts/qpalma_pipeline.py
tests/.test_sequence_utils.py.swp [deleted file]
tests/test_data/chr1.dna.flat [deleted file]
tests/test_qpalma_prediction.py
tests/test_sequence_utils.py