+ added part of the feature calculation for the quality score values
authorfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Sun, 6 Jan 2008 16:12:07 +0000 (16:12 +0000)
committerfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Sun, 6 Jan 2008 16:12:07 +0000 (16:12 +0000)
commitbf750972562f60c6216853f1afbf5f6cce8b1193
tree124f0402f895370f454f6f2f1b2560495b1c48c1
parent2351cd5cac343ee71e672dd9945108811e3b8cf5
+ added part of the feature calculation for the quality score values
+ rearranged some code to eliminate redundancies -> Plif class
+ computeSpliceAlignWithQuality is responsible for the extraction of the feature
counts. this method could be combined with the "normal" computeSpliceAlign later
on.
TODO:
- fix GC problem during parameter returning of the alignemnt
- enable the use of quality scores in the result_align function

git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@7235 e1793c9e-67f9-0310-80fc-b846ff1f7b36
QPalmaDP/penalty_info.h
QPalmaDP/qpalma_dp.cpp
QPalmaDP/result_align.cpp
python/Plif.py [new file with mode: 0644]
python/computeSpliceAlignWithQuality.py [new file with mode: 0644]
python/qpalma.py
python/set_param_palma.py