+ renamed dyn_prog directory
authorFabio <fabio@congo.fml.local>
Tue, 7 Oct 2008 09:40:25 +0000 (11:40 +0200)
committerFabio <fabio@congo.fml.local>
Tue, 7 Oct 2008 09:40:25 +0000 (11:40 +0200)
commitc56a583397d05e28cc30de20d8f237749b5f8fbe
tree91fe441658d0e341aabb710830acd212dd823ef1
parent5cde3250765fe6cf7024c5f4f45f9533d204fbf9
+ renamed dyn_prog directory
+ extended setup script and MANIFEST to work with C++ code
+ extended README
45 files changed:
DynProg/Makefile [new file with mode: 0644]
DynProg/Mathmatics.cpp [new file with mode: 0644]
DynProg/Mathmatics.h [new file with mode: 0644]
DynProg/QPalmaDP.i [new file with mode: 0644]
DynProg/common.h [new file with mode: 0644]
DynProg/config.h [new file with mode: 0644]
DynProg/debug_tools.cpp [new file with mode: 0644]
DynProg/debug_tools.h [new file with mode: 0644]
DynProg/fill_matrix.cpp [new file with mode: 0644]
DynProg/fill_matrix.h [new file with mode: 0644]
DynProg/io.cpp [new file with mode: 0644]
DynProg/io.h [new file with mode: 0644]
DynProg/penalty_info.cpp [new file with mode: 0644]
DynProg/penalty_info.h [new file with mode: 0644]
DynProg/print_align.cpp [new file with mode: 0644]
DynProg/qpalma_dp.cpp [new file with mode: 0644]
DynProg/qpalma_dp.h [new file with mode: 0644]
DynProg/result_align.cpp [new file with mode: 0644]
DynProg/test_fill_matrix.cpp [new file with mode: 0644]
MANIFEST.in [new file with mode: 0644]
README [new file with mode: 0644]
doc/qpalma.tex
dyn_prog/Makefile [deleted file]
dyn_prog/Mathmatics.cpp [deleted file]
dyn_prog/Mathmatics.h [deleted file]
dyn_prog/QPalmaDP.i [deleted file]
dyn_prog/common.h [deleted file]
dyn_prog/config.h [deleted file]
dyn_prog/debug_tools.cpp [deleted file]
dyn_prog/debug_tools.h [deleted file]
dyn_prog/fill_matrix.cpp [deleted file]
dyn_prog/fill_matrix.h [deleted file]
dyn_prog/io.cpp [deleted file]
dyn_prog/io.h [deleted file]
dyn_prog/penalty_info.cpp [deleted file]
dyn_prog/penalty_info.h [deleted file]
dyn_prog/print_align.cpp [deleted file]
dyn_prog/qpalma_dp.cpp [deleted file]
dyn_prog/qpalma_dp.h [deleted file]
dyn_prog/result_align.cpp [deleted file]
dyn_prog/test_fill_matrix.cpp [deleted file]
qpalma/Plif.py
qpalma/sequence_utils.py
scripts/__init__.py [new file with mode: 0644]
setup.py