git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8599 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:34:52 +0000 (19:34 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:34:52 +0000 (19:34 +0000)
qpalma/DataProc.py
qpalma/computeSpliceAlignWithQuality.py
scripts/PipelineHeuristic.py

index 047f2e7..ce41f38 100644 (file)
@@ -9,7 +9,7 @@ import Configuration as Conf
 import tools
 from tools.PyGff import *
 import io_pickle
-import scipy.io
+#import scipy.io
 import sys
 
 from genome_utils import load_genomic
index cd137c0..7446575 100644 (file)
@@ -183,7 +183,8 @@ def  computeSpliceAlignScoreWithQuality(dna, exons, est, original_est, quality,
    donSP       = run['numDonSuppPoints']
    accSP       = run['numAccSuppPoints']
    mmatrixSP   = run['matchmatrixRows']*run['matchmatrixCols']
-   numq        = run['numQualSuppPoints']
+   numq        = run['numQualSuppPoints']*5*6
+   print numq
 
    lengthP = weightvector[0:lengthSP]
    donP = weightvector[lengthSP:lengthSP+donSP]
index 371fd7a..369303f 100644 (file)
@@ -3,7 +3,6 @@
 
 import cPickle
 import sys
-import pydb
 import pdb
 import os
 import os.path