git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8656 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 18 Apr 2008 09:00:32 +0000 (09:00 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 18 Apr 2008 09:00:32 +0000 (09:00 +0000)
scripts/PipelineHeuristic.py

index d3ab96e..cc594bc 100644 (file)
@@ -372,7 +372,7 @@ class PipelineHeuristic:
               original_est_cut=''
               
               est_ptr=0
-              dna_ptr=0
+              dna_ptr=max_intron_size
               ptr=0
               acc_dna_ptr=0 
               while ptr<len(original_est):
@@ -406,7 +406,9 @@ class PipelineHeuristic:
                          
               assert(dna_ptr<=len(dna))
               assert(est_ptr<=len(est))
-
+              
+              print original_est, original_est_cut
+              
               score = computeSpliceAlignScoreWithQuality(original_est_cut, quality, qualityPlifs, run, self.currentPhi)
               score += AcceptorScore + IntronScore + DonorScore