git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8594 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:22:59 +0000 (19:22 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:22:59 +0000 (19:22 +0000)
qpalma/computeSpliceAlignWithQuality.py

index ba4a111..03f2ec7 100644 (file)
@@ -224,7 +224,7 @@ def  computeSpliceAlignScoreWithQuality(dna, exons, est, original_est, quality,
                dna_ptr+=1 
            else:
                value = quality[est_ptr]
-               cur_plf = qualityPlifs[(estnum-1)*6+dnanum]
+               cur_plf = qualityPlifs[(estletter-1)*6+dnaletter]
                
                Lower = 0
                for elem in cur_plf.limits: