git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8593 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:22:29 +0000 (19:22 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 19:22:29 +0000 (19:22 +0000)
qpalma/computeSpliceAlignWithQuality.py

index 0b13e28..ba4a111 100644 (file)
@@ -227,7 +227,9 @@ def  computeSpliceAlignScoreWithQuality(dna, exons, est, original_est, quality,
                cur_plf = qualityPlifs[(estnum-1)*6+dnanum]
                
                Lower = 0
-               for elem in cur_plf.limits: if elem<=value: Lower+=1 
+               for elem in cur_plf.limits:
+                   if elem<=value:
+                       Lower+=1 
                
                if Lower == 0:
                    score += numqP[(estletter-1)*6*numQualSuppPoints + dnaletter*numQualSuppPoints+0] ;