git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@10216
e1793c9e-67f9-0310-80fc-
b846ff1f7b36
self.mmatrix = mmatrix
self.qualityPlifs = qualityPlifs
- #self.read_size = 36
+ self.read_size = 36
# parameters of the heuristics to decide whether the read is spliced
#self.splice_thresh = 0.005
# forgot to do this
if strand == '-':
- pos = self.lt1.seqInfo.chromo_sizes[chromo+7]-pos-self.read_size
+ pos = self.lt1.seqInfo.chromo_sizes[chr+7]-pos-self.read_size
unb_seq = reverse_complement(unb_seq)
effective_len = len(unb_seq)