git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8609 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 20:03:42 +0000 (20:03 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 20:03:42 +0000 (20:03 +0000)
qpalma/computeSpliceAlignWithQuality.py

index 3bbfe35..f7d6dac 100644 (file)
@@ -195,6 +195,7 @@ def  computeSpliceAlignScoreWithQuality(original_est, quality, qualityPlifs, run
    map = {'-':0, 'a':1, 'c':2, 'g':3, 't':4, 'n':5, '[': 10, ']':11 }
    original_est_mapped = [ map[e] for e in original_est ]
 
+   if True:
        score=0.0
        est_ptr=0
        dna_ptr=0