git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8638 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:32:00 +0000 (21:32 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:32:00 +0000 (21:32 +0000)
scripts/PipelineHeuristic.py

index 1d00f38..d0fb48c 100644 (file)
@@ -369,8 +369,9 @@ class PipelineHeuristic:
          assert(dna_ptr<=len(dna))
          assert(est_ptr<=len(est))
 
+         print "Donor"
          DonorScore = calculatePlif(d, [don_score])[0]
-         #print DonorScore,don_score
+         print DonorScore,don_score,don_pos
          
          score = computeSpliceAlignScoreWithQuality(original_est_cut, quality, qualityPlifs, run, self.currentPhi)
          score += dummyAcceptorScore + IntronScore + DonorScore
@@ -417,10 +418,12 @@ class PipelineHeuristic:
          assert(dna_ptr<=len(dna))
          assert(est_ptr<=len(est))
 
-         print original_est,original_est_cut
+         #print original_est,original_est_cut
          
          AcceptorScore = calculatePlif(d, [acc_score])[0]
+         print "Acceptor"
          print AcceptorScore,acc_score,acc_pos
+         
          if acc_score<0.1:
              print currentAcc[0:50]
              print currentDon[0:50]