+ added small counting script
authorfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 30 May 2008 08:06:27 +0000 (08:06 +0000)
committerfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 30 May 2008 08:06:27 +0000 (08:06 +0000)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9294 e1793c9e-67f9-0310-80fc-b846ff1f7b36

tools/mappingInfo.sh [new file with mode: 0755]

diff --git a/tools/mappingInfo.sh b/tools/mappingInfo.sh
new file mode 100755 (executable)
index 0000000..f8b34bc
--- /dev/null
@@ -0,0 +1,15 @@
+#!/bin/bash
+
+dir=$1
+
+num=`cut -f1 $dir/main/reads_0.fl | sort -u | wc -l`
+echo "Started 1st vmatch run with $num reads."
+
+num=`cut -f1 $dir/main/map.vm | sort -u | wc -l`
+echo "Found $num reads in 1st vmatch run."
+
+num=`cut -f1 $dir/spliced/reads_0.fl | sort -u | wc -l`
+echo "Started 2nd vmatch run with $num reads."
+
+num=`cut -f1 $dir/spliced/map.vm | sort -u | wc -l`
+echo "Found $num reads in 2nd vmatch run"