git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8644 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:49:09 +0000 (21:49 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:49:09 +0000 (21:49 +0000)
scripts/PipelineHeuristic.py

index 974fb7d..9f0221f 100644 (file)
@@ -306,7 +306,7 @@ class PipelineHeuristic:
       effective_len = len(est)
 
       genomicSeq_start  = pos
-      genomicSeq_stop   = pos+self.intron_size*2+self.read_size*2
+      genomicSeq_stop   = pos+self.read_size+1#+self.intron_size*2+self.read_size*2
 
       start = cpu()
       currentDNASeq, currentAcc, currentDon = get_seq_and_scores(chr,strand,genomicSeq_start,genomicSeq_stop,run['dna_flat_files'])