+ shell script for the heuristic run
authorfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 30 May 2008 10:19:53 +0000 (10:19 +0000)
committerfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 30 May 2008 10:19:53 +0000 (10:19 +0000)
git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@9305 e1793c9e-67f9-0310-80fc-b846ff1f7b36

scripts/run_heuristic [new file with mode: 0755]

diff --git a/scripts/run_heuristic b/scripts/run_heuristic
new file mode 100755 (executable)
index 0000000..53e5803
--- /dev/null
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+run_dir=/fml/ag-raetsch/home/fabio/tmp/newest_run/alignment/run_enable_quality_scores_+_enable_splice_signals_+_enable_intron_length_+
+data_dir=/fml/ag-raetsch/share/projects/qpalma/solexa/new_run
+
+python PipelineHeuristic.py $data_dir/map.vm $data_dir/allReads.pipeline $run_dir/param_526.pickle $run_dir/run_obj.pickle $data_dir/spliced.heuristic $data_dir/unspliced.heuristic