git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8642 e1793c9e...
authorraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:42:28 +0000 (21:42 +0000)
committerraetsch <raetsch@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Thu, 17 Apr 2008 21:42:28 +0000 (21:42 +0000)
scripts/PipelineHeuristic.py

index 90469e1..f85e410 100644 (file)
@@ -315,8 +315,8 @@ class PipelineHeuristic:
       dna   = currentDNASeq
 
       alt_don,alt_acc = self.findHighestScoringSpliceSites(currentAcc,currentDon)
-      print alt_don
-      print alt_acc
+      #print alt_don
+      #print alt_acc
       
       alternativeScores = []
       
@@ -330,7 +330,7 @@ class PipelineHeuristic:
 
       # compute dummy scores
       IntronScore = calculatePlif(h, [self.intron_size+1])[0]
-      print IntronScore
+      #print IntronScore
       dummyAcceptorScore = calculatePlif(a, [0.25])[0] 
       dummyDonorScore = calculatePlif(d, [0.25])[0]
       
@@ -370,9 +370,9 @@ class PipelineHeuristic:
          assert(dna_ptr<=len(dna))
          assert(est_ptr<=len(est))
 
-         print "Donor"
+         #print "Donor"
          DonorScore = calculatePlif(d, [don_score])[0]
-         print DonorScore,don_score,don_pos
+         #print DonorScore,don_score,don_pos
          
          score = computeSpliceAlignScoreWithQuality(original_est_cut, quality, qualityPlifs, run, self.currentPhi)
          score += dummyAcceptorScore + IntronScore + DonorScore
@@ -422,8 +422,8 @@ class PipelineHeuristic:
          #print original_est,original_est_cut
          
          AcceptorScore = calculatePlif(d, [acc_score])[0]
-         print "Acceptor"
-         print AcceptorScore,acc_score,acc_pos
+         #print "Acceptor"
+         #print AcceptorScore,acc_score,acc_pos
 
          if acc_score<0.1:
              print currentAcc[0:50]