git-svn-id: http://svn.tuebingen.mpg.de/ag-raetsch/projects/QPalma@8663 e1793c9e...
authorfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 18 Apr 2008 09:25:38 +0000 (09:25 +0000)
committerfabio <fabio@e1793c9e-67f9-0310-80fc-b846ff1f7b36>
Fri, 18 Apr 2008 09:25:38 +0000 (09:25 +0000)
scripts/PipelineHeuristic.py

index cc594bc..66c13e3 100644 (file)
@@ -387,6 +387,7 @@ class PipelineHeuristic:
                               original_est_cut += estletter # EST letter
                           else:
                               original_est_cut += '['+acc_dna[acc_dna_ptr]+estletter+']' # EST letter
+                              print '['+acc_dna[acc_dna_ptr]+estletter+']' 
                           acc_dna_ptr+=1 
                       ptr+=4 
                   else:
@@ -406,9 +407,9 @@ class PipelineHeuristic:
                          
               assert(dna_ptr<=len(dna))
               assert(est_ptr<=len(est))
-              
-              print original_est, original_est_cut
-              
+
+              print original_est, original_est_cut              
+
               score = computeSpliceAlignScoreWithQuality(original_est_cut, quality, qualityPlifs, run, self.currentPhi)
               score += AcceptorScore + IntronScore + DonorScore