+ fixed alignment index calculation for negative strand
[qpalma.git] / qpalma / sequence_utils.py
2008-10-15 Fabio+ fixed alignment index calculation for negative strand
2008-10-14 Fabio+ extended test cases
2008-10-13 Fabio+ fixed some issues with the splice site scores and...
2008-10-08 Fabio+ got rid of some legacy code
2008-10-07 Fabio+ renamed dyn_prog directory
2008-10-02 Fabio+ removed load_genomic dependency
2008-09-13 Fabio+ added paths for the dataset generation
2008-09-10 Fabio+ changed dataset compilation to support new framework
2008-09-10 Fabio+ changed module hierarchy a bit
2008-09-01 Fabio+ changed python and c code in order to perform easier...
2008-09-01 Fabio+ removed some obsolete dependencies
2008-08-06 fabio+ minor mods in sequence_utils
2008-08-04 fabio+ minor modifications for the prefetching the whole...
2008-08-04 fabio+ minor fixes
2008-07-29 fabio+ changed sequence utils to support more general genomi...
2008-07-10 fabio+ Fixed issue with g being last element of a sequence...
2008-07-09 fabio+ wrapped sequence and score functions in order to...
2008-07-09 fabio+ some bugfixes
2008-06-25 fabio+ cleaning up code base
2008-06-23 fabio+ added proper treatment of reads overlapping into...
2008-06-20 fabio+ added checks to see whether reads lie in the 250nuc...
2008-06-05 fabio+ fixed some bugs in the negative strand lookup table
2008-06-04 fabio+ extended Lookup object to support negative strand
2008-06-04 fabio+ fixed other bug (missing n last entries of the accept...
2008-06-04 fabio+ fixed index error for negative stand queries of splic...
2008-06-03 fabio+ added code for negative strand processing
2008-05-30 fabio+ added missing modules imports
2008-05-30 fabio+ moved sequence access functions to own module