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+ set proper logging in optimizer code
[qpalma.git] / qpalma /
2008-10-21 Fabio+ set proper logging in optimizer code tree | commitdiff
2008-10-20 Fabio+ restructured test cases tree | commitdiff
2008-10-15 Fabio+ fixed issue with negative strand in lookup table tree | commitdiff
2008-10-15 Fabio+ extended manual to describe output file format tree | commitdiff
2008-10-15 Fabio+ fixed alignment index calculation for negative strand tree | commitdiff
2008-10-14 Fabio+ fixed minor bugs tree | commitdiff
2008-10-14 Fabio+ extended test cases tree | commitdiff
2008-10-13 Fabio+ extended documentation tree | commitdiff
2008-10-13 Fabio+ fixed some issues with the splice site scores and... tree | commitdiff
2008-10-10 Fabio+ extended docu tree | commitdiff
2008-10-08 Fabio+ got rid of some legacy code tree | commitdiff
2008-10-07 Fabio+ cleaned up directories tree | commitdiff
2008-10-07 Fabio+ renamed dyn_prog directory tree | commitdiff
2008-10-02 Fabio+ removed load_genomic dependency tree | commitdiff
2008-10-02 Fabio+ added palma_utils file tree | commitdiff
2008-10-02 Fabio+ added sample configuration file tree | commitdiff
2008-10-01 Fabio+ fixed minor inconsistencies in the code tree | commitdiff
2008-09-30 Fabio+ combined two scripts that were responsible for genera... tree | commitdiff
2008-09-29 Fabio+ extended pipeline code tree | commitdiff
2008-09-22 Fabio+ added some documentary text tree | commitdiff
2008-09-16 Fabio+ added some text and references to the documentation tree | commitdiff
2008-09-14 Fabio+ added module to convert pickled predictions to severa... tree | commitdiff
2008-09-13 Fabiofixed minor inconsistencies in the code (naming of... tree | commitdiff
2008-09-13 Fabio+ moved file to module directory tree | commitdiff
2008-09-13 Fabio+ added paths for the dataset generation tree | commitdiff
2008-09-11 Fabio+ added dataset generation function for training set tree | commitdiff
2008-09-10 Fabio+ changed dataset compilation to support new framework tree | commitdiff
2008-09-10 Fabio+ got rid of minor bugs tree | commitdiff
2008-09-10 Fabio+ changed module hierarchy a bit tree | commitdiff
2008-09-10 Fabio+ added settings parser module tree | commitdiff
2008-09-10 Fabio+ added settings parser module tree | commitdiff
2008-09-10 Fabio+ added configuration file parsing and checking functions tree | commitdiff
2008-09-09 Fabio+ added settings in the form of a global and a run... tree | commitdiff
2008-09-01 Fabio+ changed python and c code in order to perform easier... tree | commitdiff
2008-09-01 Fabio+ removed some obsolete dependencies tree | commitdiff
2008-09-01 fabio+ minor changes in the paths tree | commitdiff
2008-08-06 fabio+ minor mods in sequence_utils tree | commitdiff
2008-08-05 fabio+ higher level cluster tasks interface for qpalma tree | commitdiff
2008-08-04 fabio+ minor modifications for the prefetching the whole... tree | commitdiff
2008-08-04 fabio+ minor fixes tree | commitdiff
2008-07-29 fabio+ changed sequence utils to support more general genomi... tree | commitdiff
2008-07-10 fabio+ Fixed issue with g being last element of a sequence... tree | commitdiff
2008-07-09 fabio+ wrapped sequence and score functions in order to... tree | commitdiff
2008-07-09 fabio+ some bugfixes tree | commitdiff
2008-06-26 fabio+ moved penalty lookup and compute_doncc to Plif module tree | commitdiff
2008-06-25 fabio+ removed unnecessary file tree | commitdiff
2008-06-25 fabio+ cleaning up code base tree | commitdiff
2008-06-23 fabio+ added proper treatment of reads overlapping into... tree | commitdiff
2008-06-20 fabio+ added checks to see whether reads lie in the 250nuc... tree | commitdiff
2008-06-05 fabio+ fixed some bugs in the negative strand lookup table tree | commitdiff
2008-06-04 fabio+ extended Lookup object to support negative strand tree | commitdiff
2008-06-04 fabio+ fixed other bug (missing n last entries of the accept... tree | commitdiff
2008-06-04 fabio+ fixed index error for negative stand queries of splic... tree | commitdiff
2008-06-03 fabio+ added code for negative strand processing tree | commitdiff
2008-05-30 fabio+ added missing modules imports tree | commitdiff
2008-05-30 fabio+ removed unnecessary numpy dependency tree | commitdiff
2008-05-30 fabio+ added modifications of parser to repo tree | commitdiff
2008-05-30 fabio+ moved sequence access functions to own module tree | commitdiff
2008-05-13 fabio+ added configuration variables to main config file tree | commitdiff
2008-04-22 fabio+ fix changes we made so far tree | commitdiff
2008-04-21 fabio+ Aaaarghh found stupid bug in the parser (Case stateme... tree | commitdiff
2008-04-19 fabio+ support dangling end for unspliced reads in computeSp... tree | commitdiff
2008-04-18 fabio+ optimized parsers tree | commitdiff
2008-04-18 fabio+ pipeline parse is much faster now, tree | commitdiff
2008-04-18 fabioadded file tree | commitdiff
2008-04-18 fabio+ added solver wrapper for cvxopt tree | commitdiff
2008-04-18 fabioanother module init tree | commitdiff
2008-04-18 fabiomodule init tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects... tree | commitdiff
2008-04-17 raetschfirst version of faster heuristic tree | commitdiff
2008-04-17 fabio+ updated filtering tree | commitdiff
2008-04-17 fabio+ changes tree | commitdiff
2008-03-20 fabio+ changes in the main configuration -> no pickled init... tree | commitdiff
2008-03-12 fabio+ fixed mentioned index bugs of the SpliceAlign of... tree | commitdiff
2008-03-05 fabio+ removed some obsolete variables tree | commitdiff
2008-03-05 fabio+ refactored code further tree | commitdiff
2008-02-11 fabio+ added scripts for model selection on the cluster tree | commitdiff
2008-02-10 fabio+ changed filter behavior (tendency towards smaller... tree | commitdiff
2008-02-10 fabio+ fixed a bug in the filtering (forgot to disable remov... tree | commitdiff
2008-02-08 fabio+ fixed bug in the computeSpliceAlign... function tree | commitdiff
2008-02-08 fabio+ minor changes to filterReads tree | commitdiff
2008-02-06 fabio+ resolved an issue with the memory mapping in filterReads tree | commitdiff
2008-02-06 fabio+ rearranged code tree | commitdiff
2008-02-05 fabio+ extended dataset compilation function tree | commitdiff
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QPalma the short reads alignment project