+ added palma_utils file
[qpalma.git] / scripts / PipelineHeuristic.py
2008-10-02 Fabio+ added palma_utils file
2008-09-22 Fabio+ added some documentary text
2008-09-10 Fabio+ changed dataset compilation to support new framework
2008-09-01 fabio+ minor changes in the paths
2008-08-21 fabio+ fixed bug in reads stemming from negative strand
2008-08-04 fabio+ minor modifications for the prefetching the whole...
2008-07-31 fabio+ fixed quality conversion: According to new specs...
2008-07-31 fabio+ changed PipelinHeuristic to support new data access...
2008-07-29 fabio+ fix version before moving to new format
2008-07-10 fabio+ modified Lookup table to work with negative strands
2008-06-30 fabio+ pruned a lot of import declarations
2008-06-11 fabio+ changed output format of alignment file script to...
2008-06-02 fabio+ fix starting point for rewrite of data accession...
2008-05-14 fabio+ made original reads file location a parameter for...
2008-04-19 fabio+ added faster evaluation function
2008-04-18 fabio+ fixed missing newlines in output
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschoptimized heuristic
2008-04-18 fabio+ saving results in two files (spliced/unspliced)
2008-04-18 raetschheuristic seems to work well
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 fabioworks soso
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschunspliced should work
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschfirst version of faster heuristic
2008-04-17 fabio+ updated filtering
2008-04-17 fabio+ extended alignment script
2008-04-16 fabio+ minor modifications to allow for parallel prediction...
2008-04-16 fabio+ added new format for QPalma alignment output
2008-04-16 fabio+ added field to prediction dict
2008-04-14 fabio+ refined creation of alternative alignments
2008-04-14 fabio+ finished first running version of the spliced/unsplic...
2008-04-14 fabio+ added information on cut positions of spliced reads
2008-04-09 fabio+ added first version of the heuristic for the mapping...