+ Aaaarghh found stupid bug in the parser (Case statement of "one key - n elements...
[qpalma.git] / scripts /
2008-04-19 fabio+ added faster evaluation function
2008-04-19 fabio+ fixed some index bugs in the evaluation
2008-04-18 fabio+ using new parsers now
2008-04-18 fabio+ changed code for prediction -> easier and faster
2008-04-18 fabio+ fixed missing newlines in output
2008-04-18 fabio+ changed prediction
2008-04-18 fabiominor changes of paths
2008-04-18 fabio+ Lookup table checked for pos. strand
2008-04-18 fabio+ added wrapper class for prefetching of genomic sequen...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschoptimized heuristic
2008-04-18 fabio+ saving results in two files (spliced/unspliced)
2008-04-18 raetschheuristic seems to work well
2008-04-18 fabio+ added if statement to create numpy mat for unspliced...
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 fabio+ a slighlty better way to create a big dataset
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-18 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 fabioworks soso
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 fabiogit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschunspliced should work
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-04-17 raetschfirst version of faster heuristic
2008-04-17 fabio+ updated filtering
2008-04-17 fabio+ added small script for the evaluation of the first...
2008-04-17 fabio+ changed alignment output format to be more blat-like
2008-04-17 fabio+ extended alignment script
2008-04-16 fabio+ minor modifications to allow for parallel prediction...
2008-04-16 fabio+ added new format for QPalma alignment output
2008-04-16 fabio+ added field to prediction dict
2008-04-14 fabio+ refined creation of alternative alignments
2008-04-14 fabio+ finished first running version of the spliced/unsplic...
2008-04-14 fabio+ added information on cut positions of spliced reads
2008-04-09 fabio+ added first version of the heuristic for the mapping...
2008-04-07 fabiominor changes in the dataset compilation and the evalua...
2008-03-20 fabio+ minor changes in qpalma_main to take into accout...
2008-03-20 fabio+ added function to create tex table from results
2008-03-20 fabio+ minor changes in Evaluation an soap remapping wrapper
2008-03-19 fabio+ added script to automatically perform alignment using...
2008-03-18 fabio+ added splice site score exception to training/prediction
2008-03-17 fabio+ removed duplicated code
2008-03-14 fabio+ training works,
2008-03-12 fabio+ fixed nasty index bugs in the when creating the label...
2008-03-11 fabio+ now using the new interval query interface
2008-03-10 fabio+ fixed bug in the index calculation of donor/acceptor...
2008-03-07 fabio+ changed training method to work with new dataset...
2008-03-06 fabio+ refactored compile dataset -> removed remaining redun...
2008-03-05 fabio+ refactored code further
2008-02-28 fabio+ extended scripts
2008-02-27 fabio+ minor changes
2008-02-26 raetschgit-svn-id: svn.tuebingen.mpg.de/ag-raetsch/projects...
2008-02-26 fabio+ first running version of Evaluation script
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